FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9385977
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG517930.5518125603759736No Hit
GGGGGT247510.2637019033820347No Hit
CGGGGG225990.24077408244234988No Hit
GGCGGG225600.24035856895877755No Hit
GGGTGG223910.238558010529964No Hit
AGGGGG220580.23501016463176927No Hit
GGGCGG219870.23425371700782988No Hit
GTGGGG211460.22529354163130805No Hit
GGGGTG209950.22368475865645102No Hit
GGGGCG206780.22030737982843981No Hit
GGTGGG205050.2184642046320804No Hit
TGGGGG204140.21749467317041157No Hit
GCGGGG202580.21583261923612215No Hit
GGGGGC201700.21489505035011272No Hit
GGGGGA186170.1983490903504238No Hit
GGAGGG183630.1956429256112603No Hit
GAGGGG181170.1930219944071885No Hit
GGGGAG175640.18713022629397025No Hit
GGGAGG170390.18153677555357317No Hit
GGGTGT128100.13648019806568884No Hit
GGGCGT122220.1302155332364441No Hit
GTGTGG119700.12753067688105352No Hit
CCGGGG119020.1268061918327735No Hit
AGGGGT115260.12280021568346056No Hit
GTGCGG115030.12255516927007172No Hit
ATGCCG114910.12242731896743408No Hit
GGCGGT114790.12229946866479642No Hit
GCCGGG114430.12191591775688349No Hit
AGGTGG112870.12025386382259406No Hit
TAGGGG112210.119550687158087No Hit
CGGGGT111870.119188444633947No Hit
GCGTGG111050.1183148008992564No Hit
GCGGGT110820.11806975448586758No Hit
CAGGGG110790.11803779191020818No Hit
TGGGGT110320.11753704489154407No Hit
GGGGTT109620.11679125145949111No Hit
GGCCGG109270.11641835474346462No Hit
TGGTGG108770.11588564514914111No Hit
GGCTGG108590.11569386969518464No Hit
GTGGGT107570.11460714212276463No Hit
CGGTGG106850.11384004030693874No Hit
GGCAGG105950.1128811630371564No Hit
TTGGGG105700.11261480823999462No Hit
GGGTTG105670.11258284566433521No Hit
TGTGGG104990.11185836061605521No Hit
CGCGGG104720.11157069743512049No Hit
AGCGGG104390.11121910910286696No Hit
GGCGCG104350.11117649233532108No Hit
GGTGGT103750.11053724082213286No Hit
TGGGTG103110.10985537254139872No Hit
GGGCTG103000.10973817643064754No Hit
ATGGGG102780.1095037842091452No Hit
CGGCGG102780.1095037842091452No Hit
AGGGTG102250.10893911203916226No Hit
GTTGGG102070.10874733658520579No Hit
GGGTAG101280.1079056554261746No Hit
CGGGCG100800.10739425421562401No Hit
CGGGGA100330.10689350719695989No Hit
GGGGTA100100.10664846078357107No Hit
AGGCGG100100.10664846078357107No Hit
GGGGCT100000.10654191886470636No Hit
GTCGGG99570.10608378861358812No Hit
GGGTCG99440.105945284119064No Hit
CGTGGG99090.10557238740303754No Hit
GTGGTG98960.10543388290851341No Hit
CGGGTG98800.10526341583832989No Hit
CTGGGG98490.10493313588984929No Hit
GGATGG98390.10482659397098458No Hit
GGGGAT98350.1047839772034387No Hit
GGTTGG97850.10425126760911518No Hit
TGGCGG97010.10335631549065163No Hit
AGTGGG96580.1028981852395334No Hit
AGGGGC96570.10288753104764692No Hit
TCGGGG96210.102503980139734No Hit
TGAGGG95830.1020991208480481No Hit
GGGTGC95580.10183276605088634No Hit
GGAGGT95530.10177949509145398No Hit
GGGCGC95080.1013000564565628No Hit
GGTGTG94930.10114024357826576No Hit
TGGGGC94900.10110828100260633No Hit
GGTGGA94320.10049033787319103No Hit
GAGGGT94100.10025594565168869No Hit
ACGGGG94010.10016005792471046No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)