FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14071593
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG393670.27976221313393584No Hit
GGGTGG244450.17371878223027057No Hit
TGGGGG243660.17315736747076185No Hit
GGTGGG237720.1689360970005315No Hit
GTGGGG230140.16354935791562478No Hit
GGGGTG220330.15657786577539587No Hit
GGGGGT217430.15451697615188273No Hit
CGGGGG216080.15355759649955764No Hit
AGGGGG199950.14209478628325875No Hit
GGGGGC193940.1378237702014264No Hit
GGGCGG182960.13002081569584908No Hit
GCGGGG182690.12982893976538407No Hit
GAGGGG176860.12568584097052837No Hit
GGCGGG176000.12507468059941756No Hit
GGGGCG172470.12256608047148607No Hit
GGGGGA170040.12083919709730093No Hit
GGGTGT168330.1196239828710225No Hit
GGGGAG154380.10971039313033001No Hit
GGGTTG153690.10922004353025275No Hit
TGGGGT153590.10914897837082127No Hit
GGTGGT153590.10914897837082127No Hit
GGAGGG153060.1087723330258344No Hit
TGTGGG151820.10789112504888394No Hit
TGGTGG150320.10682514765741165No Hit
GGTTGG148170.10529724672963467No Hit
GGGGTT148050.10521196853831688No Hit
TTGGGG148000.10517643595860113No Hit
GTGTGG146330.10398964779609529No Hit
GTTGGG142760.10145262160439121No Hit
GGTGTG142320.10113993490289265No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)