FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14303751
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG322660.22557719300342968No Hit
GGGGGT202090.14128461827949884No Hit
GTGGGG190720.13333565440282064No Hit
GGGTGG185070.1293856415705223No Hit
GAGGGG182670.12770776001343984No Hit
TGGGGG173740.12146464238646214No Hit
GGGGTG170400.11912959055285569No Hit
GGTGGG169930.11880100541459371No Hit
GGCGGG167780.11729790318637397No Hit
GGGCGG166040.11608143905748919No Hit
GCAATT160280.11205452332049126No Hit
AGGGGG159860.11176089404800181No Hit
GGGGGC159010.11116664432986843No Hit
GGGGGA153650.10741937551905091No Hit
GGGGCG152730.10677618758883596No Hit
CGGGGG147000.10277024537130157No Hit
GCGGGG145440.10167962235919795No Hit
GGGGAG144070.10072183163703005No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)