FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13770903
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG462400.3357804495464095No Hit
GGGGGT277390.20143196128823213No Hit
TGGGGG270120.19615271416841729No Hit
GGGTGG269150.19544833043991378No Hit
GTGGGG247930.18003902866790944No Hit
GGTGGG236100.17144845185533586No Hit
GGGGTG220410.16005486350459372No Hit
GGGGGC210700.15300376453163603No Hit
AGGGGG194100.14094936257992668No Hit
GAGGGG184010.13362231946590578No Hit
CGGGGG177420.1288368671248356No Hit
TGGTGG174420.12665836074802067No Hit
GGGTGT172970.12560541599922678No Hit
GGGGTT172750.125445658864927No Hit
GGGGGA172600.12533673354608627No Hit
TGTGGG172560.1253076867943954No Hit
GCGGGG171320.12440723749197857No Hit
GGAGGG169990.12344143299825726No Hit
GGTGGT166700.12105233767168355No Hit
GTGGGT165320.12005022473834867No Hit
GGGAGG164060.11913525206008639No Hit
TTGGGG158740.11527203408520123No Hit
GTGTGG157670.11449503347747059No Hit
TGGGTG157420.11431349127940266No Hit
GGGTTG153850.1117210686909929No Hit
GGTTGG153260.11129262910355261No Hit
GTTGGG151910.11031230123398589No Hit
TGGGGT149520.10857675782045666No Hit
GTGGTG147910.1074076260648993No Hit
GGGGAG144910.10522911968808435No Hit
GGTGTG143660.1043214086977448No Hit
AGGGGT141640.10285454773735607No Hit
GGGCGG141240.10256408022044743No Hit
GGGGCG140880.10230265945522964No Hit
GGGGTA138130.1003056952764826No Hit
AGGTGG137720.10000796607165122No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)