FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12659102
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG383530.30296777765121097No Hit
TGGGGG230340.18195603448017086No Hit
GGTGGG227950.18006806485957694No Hit
GGGGGT227920.1800443664961385No Hit
GGGTGG225700.17829068760169559No Hit
GGGGTG214270.16926161113165847No Hit
GTGGGG214010.16905622531519218No Hit
GGGCGG193990.15324151744728814No Hit
GGGGGC192870.15235677854558718No Hit
AGGGGG190610.1505715018332264No Hit
GGCGGG188910.14922859457171608No Hit
GCGGGG178700.1411632515481746No Hit
CGGGGG166900.13184189526239698No Hit
GGGTGT165730.1309176590882987No Hit
GGGAGG165140.1304515912740098No Hit
GGGGCG163950.1295115561909526No Hit
GTGTGG161850.12785267075026333No Hit
GAGGGG161210.1273471056635771No Hit
GGTTGG158890.12551443222433945No Hit
GGAGGG154280.12187278370930259No Hit
GTGGGT154110.12173849298315158No Hit
GGGGAG153990.1216436995293979No Hit
GGGGTT148670.1174411897463185No Hit
GGTGGT146820.11597979066761607No Hit
TTGGGG145920.11526883976446356No Hit
GGGGGA145220.11471587795090048No Hit
TGGTGG144650.11426560904557054No Hit
TGGGTG143000.11296219905645756No Hit
TGTGGG140390.11090044143731521No Hit
GTTGGG138350.10928895272350284No Hit
GGGTTG137920.1089492761808855No Hit
TGGGGT135300.1068796191072637No Hit
GTGGTG132620.10476256530676505No Hit
GGTGTG131020.10349865259004942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)