FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2925667
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG244450.8355359649611525No Hit
GGGGGT116050.396661684327027No Hit
GGGTGG104910.35858489705082636No Hit
GGGGTG100660.3440582950827965No Hit
GAGGGG96740.3306596410322843No Hit
TGGGGG94670.32358433136785564No Hit
AGGGGG90540.309467892278923No Hit
GGGCGG89910.3073145371636622No Hit
GGGAGG82590.28229460153872604No Hit
GGTGGG81480.27850059490707585No Hit
GGAGGG80740.2759712571526424No Hit
CGGGGG78330.2677338193307714No Hit
GGGGCG76880.2627776845416789No Hit
GGGGAG76330.26089777134581615No Hit
GCGGGG73150.25002845504973736No Hit
GTGGGG72020.2461660879382377No Hit
GGGGGA71300.2437051106636538No Hit
GGGGGC71260.2435683897039547No Hit
GGCGGG69590.2378602896365171No Hit
GGTGTG61260.20938814977917858No Hit
GGGGTT57120.19523753045032124No Hit
GGAGGT56940.1946222861316753No Hit
GGGTGT55080.1882647615056669No Hit
GGGGTA55030.18809386030604303No Hit
GGGGAT54110.18494927823296364No Hit
AAGGGG53750.1837187895956717No Hit
TGTGGG49420.16891874570824364No Hit
GGGTTG49220.16823514090974812No Hit
GAGGGT48020.16413351211877494No Hit
TGGGGT46780.15989516236810272No Hit
TGGGTG46520.15900647613005855No Hit
GTGTGG45160.154357963500289No Hit
GGAAGG44650.15261477126412543No Hit
GGGTAG44560.15230714910480242No Hit
AGAGGG44430.15186280598578034No Hit
TGGGGA44260.15128174190705915No Hit
AGGGGT43550.14885494487240003No Hit
GGTGGT43060.147180113116086No Hit
GGTGGA43020.1470433921563869No Hit
TGGTGG42780.14622306639819227No Hit
AGGGAG42710.14598380471871883No Hit
TTGGGG42490.14523183944037377No Hit
GGCAGG42160.14410389152285616No Hit
GGTTGG41150.14065168729045377No Hit
GGTAGG41110.14051496633075466No Hit
GTTGGG40870.13969464057256004No Hit
TGAGGG40600.1387717740945911No Hit
TAGGGG40150.13723366329797615No Hit
GGGTGA39610.13538793034203825No Hit
GTGGGT39460.1348752267431666No Hit
GGCTGG39350.13449924410399405No Hit
AGGGTG39320.13439670338421975No Hit
CGGGGT39100.13364473810587466No Hit
GGCCGG39010.13333711594655168No Hit
GGTGAG38650.13210662730925973No Hit
GAGAGG38530.13169646443016242No Hit
GGGAAG38490.13155974347046331No Hit
GGGAGA38230.13067105723241912No Hit
ATGGGG38140.13036343507309617No Hit
GGCGGT37740.1289962254761051No Hit
TGGAGG37490.1281417194779857No Hit
GAGTGG37370.12773155659888838No Hit
GGGGAC36880.12605672484257435No Hit
GGGGCT36660.1253047595642293No Hit
GCAGGG36570.12499713740490631No Hit
GGGCGT36270.12397173020716301No Hit
GGGGTC35480.1212714912531057No Hit
GGGATG35440.1211347702934066No Hit
AGGTGG35270.1205537062146854No Hit
TGCGGG35140.12010936309566332No Hit
GAAGGG35020.119699200216566No Hit
CCGGGG34710.11863961277889794No Hit
GTGGGA34710.11863961277889794No Hit
AGTGGG34310.11727240318190689No Hit
GCGAGG34090.11652043790356181No Hit
TGGGTA33540.11464052470769913No Hit
AGGGCA33430.1142645420685266No Hit
GGGCGA33370.11405946062897794No Hit
GTGAGG33260.11368347798980541No Hit
GGTGCG33070.11303405343123465No Hit
CGGGTG33050.1129656929513851No Hit
CAGGGG32920.112521349832363No Hit
CGGGCG32810.11214536719319047No Hit
GCTGGG32590.11139340191484541No Hit
GAGGTG32520.11115414023537197No Hit
GTGGTG32230.11016291327755345No Hit
TGGGCG32230.11016291327755345No Hit
TGGGAG32230.11016291327755345No Hit
AGGAGG32220.1101287330376287No Hit
GGAGTG32170.1099578318380048No Hit
GGGAGT32090.1096843899186066No Hit
GGAGAG32010.10941094799920839No Hit
GGAGGC31930.10913750607981017No Hit
GTGCGG31870.10893242464026151No Hit
GCGGGT31390.10729177312387227No Hit
GGGGCA31310.10701833120447404No Hit
GGATGG31280.10691579048469974No Hit
GGGCTG31210.1066765288052263No Hit
GGGTCG31170.10653980784552719No Hit
GGGCCG31050.10612964496642989No Hit
GAGGGA31000.105958743766806No Hit
TGTTGG30910.10565112160748301No Hit
TCGGGG30620.1046598946496645No Hit
GGCGGA30570.10448899345004063No Hit
GTGGCG30290.10353194673214688No Hit
CGTGGG30190.10319014433289914No Hit
GATGGG30100.10288252217357614No Hit
GGGTGC30020.10260908025417795No Hit
GGGCAG29940.10233563833477972No Hit
CGCGGG29660.10137859161688599No Hit
GACGGG29630.10127605089711167No Hit
GGGTTT29270.10004556225981973No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)