FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6922349
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG457250.660541674509621No Hit
TGGGGG216950.31340517503523735No Hit
GGGGGT216060.3121194842964433No Hit
GTGGGG194580.28108955500510013No Hit
GGGTGG194020.2802805810570949No Hit
GGTGGG184870.2670625245852239No Hit
AGGGGG184260.2661813208204325No Hit
GGGGAG184150.2660224152235029No Hit
GGGGTG179510.25931948822574535No Hit
GAGGGG161920.233909038680367No Hit
GGGAGG159940.23104873793563427No Hit
GGAGGG158550.22904074902897845No Hit
GGGGGA155480.22460583827830696No Hit
GGCGGG152790.22071987413521046No Hit
CGGGGG151590.21898635853234213No Hit
GCGGGG143830.2077762909671269No Hit
GGGGGC143350.20708288472597955No Hit
GGGCGG140360.20276354168216598No Hit
GGGGCG130150.1880142130944279No Hit
GCAATT126790.18316036940639657No Hit
TGTGGG124120.17930329719001453No Hit
TGGGGT119010.1719214099144669No Hit
GTGGGT118710.17148803101374982No Hit
GGGGTT112220.16211260079490358No Hit
GGGTTG111560.161159167213326No Hit
TTGGGG111330.16082691005610958No Hit
TGGTGG108860.15725875710687226No Hit
GGGTGT106220.1534450227805619No Hit
GGTTGG104290.15065695185261535No Hit
GTGTGG101270.14629427091873004No Hit
GGTGGT100690.14545640504401033No Hit
GTAGGG96810.13985137126140273No Hit
AGGGGT94810.13696217858995552No Hit
GGATGG93570.13517087913365824No Hit
GTTGGG93360.1348675139031563No Hit
ATGGGG92840.13411632380858No Hit
GGGGAT92660.13385629646814975No Hit
GTGGTG91430.1320794429752097No Hit
GGTAGG89970.12997033232505323No Hit
GGGTAG88520.127875667638254No Hit
TGAGGG87000.12567988120795412No Hit
TAGGGG86350.12474089358973377No Hit
AGTGGG85770.12390302771501409No Hit
TGGGTG85460.12345520285093976No Hit
GAGTGG85460.12345520285093976No Hit
TGGGAG84280.12175057917478589No Hit
CTGGGG83520.12065268595963595No Hit
TCGGGG82940.11981482008491626No Hit
CAGGGG82360.11897695421019658No Hit
AGGTGG82350.11896250824683934No Hit
GTGGAG82230.11878915668655249No Hit
GTGAGG82110.11861580512626567No Hit
TGGGGA81470.11769126347140255No Hit
GAGGGT81230.11734456035082888No Hit
CGGGGT80340.11605886961203488No Hit
GGGAGT79680.1151054360304573No Hit
GGGGTA79490.11483096272666982No Hit
GGAGGT78210.11298187941694358No Hit
GGTGTG77850.11246182473608309No Hit
TGGTGT77540.11201399987200876No Hit
CGGTGG77180.11149394519114827No Hit
GGGATG77010.11124836381407525No Hit
TGGAGG76140.10999156500199571No Hit
GAGGTG76090.10991933518520952No Hit
GGTGGA75580.10918259105399047No Hit
GATGGG75420.10895145564027472No Hit
GGGGAA75330.10882144197005958No Hit
TTTGGG75170.10859030655634382No Hit
TGGCGG74420.10750685930455109No Hit
GGGCGT74350.10740573756105046No Hit
TGCGGG73890.10674122324661758No Hit
AGGGTG73820.10664010150311692No Hit
GCGGGT73740.10652453379625905No Hit
GGAGTG73670.10642341205275839No Hit
GTGTGT73630.10636562819932945No Hit
AGAGGG73070.10555665425132423No Hit
GTGGGA72960.10539774865439462No Hit
GGTGAG72880.10528218094753673No Hit
GGGGCT72780.10513772131396437No Hit
GGTCGG72590.1048632480101769No Hit
AAGGGG71860.10380869268509865No Hit
GGAAGG71540.10334642185766711No Hit
GGCTGG71390.10312973240730856No Hit
TGTTGG71190.10284081314016384No Hit
GGGCTG70740.10219074478908823No Hit
AGGGAG70720.10216185286237374No Hit
GGGTTT70440.10175736588837114No Hit
GGGTGA70220.10143955469451194No Hit
GGCAGG69640.10060168881979223No Hit
GTCGGG69500.10039944533279094No Hit
AGGCGG69400.10025498569921856No Hit
GTTGGT69380.1002260937725041No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)