FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8030339
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG271680.3383169751613226No Hit
GTGGGG179040.22295447303034155No Hit
GGGGGT175640.21872052973106118No Hit
GGGGTG162240.20203381202213255No Hit
GGGTGG153750.19146140654834123No Hit
TGGGGG149070.1856335081246259No Hit
GGTGGG142410.17733996036780017No Hit
CGGGGG126970.15811287667930335No Hit
AGGGGG124000.15441440267963782No Hit
GGGCGG123440.1537170473126975No Hit
GGCGGG119620.1489600874882119No Hit
GGGTGT112190.13970767610184326No Hit
GGGGGA111400.13872390692348105No Hit
GGTGGT109790.1367190102435277No Hit
TGGTGG109520.1363827853344672No Hit
GGGTTG106580.13272166965803062No Hit
GTGTGG106340.13242280307219906No Hit
TTGGGG105960.13194959764463243No Hit
GTTGGG105960.13194959764463243No Hit
GGAGGG105580.1314763922170658No Hit
GGGGCG104450.13006922870877555No Hit
TGTGGG104000.1295088538603414No Hit
TGGGTG103240.1285624430052081No Hit
GTGGGT102810.12802697370559324No Hit
GGGGTT102800.1280145209311836No Hit
TGGGGT100930.1256858521165794No Hit
GGGAGG99560.12397982202245758No Hit
GTGGTG99490.12389265260159005No Hit
GCGGGG99140.12345680549725237No Hit
GGGGGC96150.11973342594876754No Hit
GGTTGG95560.1189987122585983No Hit
GAGGGG94530.11771607649440453No Hit
GGTGTG92740.11548702987507752No Hit
GGGGAG88380.11005762023247088No Hit
GGGGTA86690.10795310135724033No Hit
AGGTGG83870.10444141897371954No Hit
TGGTGT83820.1043791551016713No Hit
TGTGGT81680.10171426137800658No Hit
ATGGGG80660.10044407838822246No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)