FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15123864
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG420030.27772664446070133No Hit
GTGGGG286330.18932331049789922No Hit
GGGGGT276860.18306168317832006No Hit
GGGTGG246340.1628816551114186No Hit
GGGGTG245910.16259733623629516No Hit
GGTGGG236560.15641505371907602No Hit
TGGGGG235890.1559720452392325No Hit
GCGGGG220560.14583574673773847No Hit
CGGGGG219170.14491666944373474No Hit
GGCGGG208970.13817236124313206No Hit
AGGGGG200020.13225456140044634No Hit
GGGGCG199150.1316793115833361No Hit
GGGGGC195470.12924607097762847No Hit
GGGCGG195120.1290146486374117No Hit
GGAGGG193420.12789059727064458No Hit
GAGGGG182230.12049169445057163No Hit
GGGGGA179440.11864692779570088No Hit
GGGAGG177890.11762205743188381No Hit
TTGGGG175920.11631948025980661No Hit
GGGGTT175430.11599548898350315No Hit
GGTGGT173960.11502351515459276No Hit
GTGGGT172520.11407137752627239No Hit
GGGGAG171890.11365481731388222No Hit
GTGTGG170100.11247125734534509No Hit
GTTGGG164660.10887429297169031No Hit
GGGTGT164210.10857674996284018No Hit
GTGGTG163020.1077899140061032No Hit
TGGTGG161910.10705597458427292No Hit
GGTTGG158270.10464918224601862No Hit
GGGTTG157390.10406732036204504No Hit
GGTGTG154440.10211676063736091No Hit
GGGCGT151780.10035795085171356No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)