FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9287369
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG241350.259869075946051No Hit
GGGGGT166140.17888812213663524No Hit
TGGGGG154790.16666722297778844No Hit
GGTGGG148720.1601314645730131No Hit
GGGGTG146180.1573965673163196No Hit
GTGGGG145790.15697664214698479No Hit
GGGTGG142510.15344496379975858No Hit
GGGGTT136150.14659695334599065No Hit
CGGGGG114590.12338262860019883No Hit
TGGTGG114150.12290886687069287No Hit
TTGGGG113840.12257508019763186No Hit
GGTGGT111220.11975404444466457No Hit
GGGGGA109850.11827892269597558No Hit
TGGGGT108620.11695454331576574No Hit
GAGGGG107450.11569476780776126No Hit
AGGGGG107070.11528560995046067No Hit
GGGTGT106860.11505949639774192No Hit
GGGGAG106730.11491952134129697No Hit
GTGTGG106600.11477954628485204No Hit
GGGAGG106490.11466110585247555No Hit
GGTTGG105260.11333672647226571No Hit
GGAGGG103580.1115278180505157No Hit
GTTGGG102550.11041878491099041No Hit
GTGGGT102420.11027880985454545No Hit
TGGGTG101380.10915900940298594No Hit
GGGTTT100050.10772695690243383No Hit
GCGGGG100040.10771618959039961No Hit
GGGGCG98070.10559502911965703No Hit
GGGTTG96780.10420604586724184No Hit
GGCGGG96130.10350617058501714No Hit
GGGGGC95520.10284936455092933No Hit
GGTGTG94850.10212795464463616No Hit
TGTGGG93830.10102968881714508No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)