FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4775563
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG163570.3425145893793046No Hit
GGGGGT97960.20512764672982015No Hit
GTGGGG94420.1977149081689426No Hit
GGGTGG85320.1786595632808111No Hit
GGGGTG81100.16982290883818307No Hit
CGGGGG75960.15905977996730436No Hit
TGGGGG73310.153510696016365No Hit
GGGCGG72800.15244275910505212No Hit
GGCGGG72640.152107720074052No Hit
GGTGGG70910.14848511055136326No Hit
GGGGGC68680.14381550405679916No Hit
GCGGGG68320.1430616662370489No Hit
AGGGGG67280.14088391253554816No Hit
GGGGAG66680.13962751616929775No Hit
GGAGGG65180.13648652525367166No Hit
GGGAGG64670.1354185883423588No Hit
GTGTGG62420.1307071019689197No Hit
GAGGGG61220.12819430923641884No Hit
GGGGGA58920.12337812316579218No Hit
GTGGGT58520.1225405255882919No Hit
GGGGTT57380.12015337249241607No Hit
GGGTGT56780.11889697612616566No Hit
TTGGGG52990.11096073907935045No Hit
GGTGGT52740.11043724059341276No Hit
GGTGTG52520.1099765619257876No Hit
GTGGTG52350.10962058295534997No Hit
GGGGCG51890.10865734574122465No Hit
GTTGGG51730.10832230671022454No Hit
GGTTGG50460.10566293440166113No Hit
GGGTTG49440.1035270605790354No Hit
GGCTGG49290.10321296148747279No Hit
CTGGGG49080.10277322275928515No Hit
GTCGGG48410.10137024681697215No Hit
GGGGTA48080.10067922881553443No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)