FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5364935
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG183370.3417935166036494No Hit
GTGGGG101530.18924740001509804No Hit
GGGGGT99330.185146697956266No Hit
GGTGGG96220.17934979640946255No Hit
GGGTGG90770.16919123903644684No Hit
GGGGTG84810.15808206436797465No Hit
AGGGGG83990.15655362087331906No Hit
TGGGGG81800.1524715583692999No Hit
GAGGGG81600.15209876727304245No Hit
GGCGGG81580.15206148816341672No Hit
GCGGGG80570.15017889312731655No Hit
CGGGGG75190.14015081263799095No Hit
GGGGGA73890.1377276705123175No Hit
GGGCGG73280.13659065766873224No Hit
GGAGGG72450.1350435746192638No Hit
TGCAAT70310.131054709889309No Hit
GGGGGC67650.12609658830908482No Hit
GTGTGG64970.1211011876192349No Hit
GGGGCG64240.11974050011789518No Hit
GTGGGT63980.1192558716927605No Hit
GGGGAG62320.1161617055938236No Hit
GTTGGG60690.11312345815932533No Hit
GGGAGG59800.11146453778097963No Hit
GGTGGT59160.11027160627295578No Hit
GGGTGT57250.10671145130369707No Hit
GTGGTG57100.10643185798150395No Hit
GGGTTG57020.10628274154300099No Hit
GGTTGG56380.10508981003497712No Hit
GGGGTT54520.10162285283978277No Hit
TTGGGG54470.10152965506571841No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)