FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6590466
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG136730.20746636125578982No Hit
GGGGGT103320.1567719187080246No Hit
TGGGGG98300.14915485490707334No Hit
GGGTGG95990.14564979168392644No Hit
GGTGGG90950.13800238101524231No Hit
GTGGGG83870.1272595898378051No Hit
CGGGGG81220.12323862986319935No Hit
TGCAAT79530.12067431953977155No Hit
AGGGGG77450.11751824529555269No Hit
TTGGGG76900.11668370643289867No Hit
GAGGGG76360.11586434100411108No Hit
TGGGGT75380.11437734448520029No Hit
GTTGGG73850.11205580910363547No Hit
GGGGTT72920.11064467975405684No Hit
GGGTGT72650.11023499703966305No Hit
GGGTTG72200.10955219251567339No Hit
GGTTGG70470.10692718845677984No Hit
GTGTGG70280.10663889321331754No Hit
GGGGAG70090.10635059796985524No Hit
GGAGGG69860.10600160899092718No Hit
TGGGTG69360.10524293729760537No Hit
GGGGGA68590.10407458288988973No Hit
GGTGGT68290.10361937987389662No Hit
GGCGGG67160.10190478184698927No Hit
GGGTTT66740.10126749762459893No Hit
GGGAGG66480.10087298834407156No Hit
TGTGGG66140.10035709159261273No Hit
GTGGGT65970.10009914321688329No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)