FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6407797
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT261570.4082058155088246No Hit
GGGGGG157220.24535733575829574No Hit
GTGGTG103940.16220863426229015No Hit
GGTGGG100180.15634078295551498No Hit
GGGGTG98850.15426518661561844No Hit
TGGGTG98680.15399988482781213No Hit
GGGGGT96790.15105035318690652No Hit
TGGGGG96400.1504417196737038No Hit
GGGTGG85910.13407103876730178No Hit
GGGGGC85730.13379013099197742No Hit
GTGGGG83040.1295921203496303No Hit
GGTGTG81930.12785985573513017No Hit
GGCGGG81000.12640849889595443No Hit
GGTGGT78050.12180473257813879No Hit
GTGGGT77830.12146140085274237No Hit
GCGGGG77250.12055625357669725No Hit
TTGGGG77210.12049382962662518No Hit
AGGGTG77030.12021292185130084No Hit
GGTAGG75710.11815293149892232No Hit
CGGGGG75440.11773156983593581No Hit
GGGGTA75030.11709172434769705No Hit
GAGGGG74340.11601491120895371No Hit
GGGAGT73480.11467279628240407No Hit
GTGTGG71590.11172326464149848No Hit
AGGGGG70680.11030311977735874No Hit
TGGTGG70640.11024069582728667No Hit
AGGTGG68310.10660450073558822No Hit
GGGGAG67920.10599586722238549No Hit
GGGAGG65990.1029839116314078No Hit
GGGGCG65430.10210997633039873No Hit
GGGCGG64450.10058058955363287No Hit
GGTTGT64350.10042452967845268No Hit
GGGTTG64250.10026846980327248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)