FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16484390
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1055500.6403027348904025No Hit
GGGTGG560370.339939785457636No Hit
GGGGGT533410.32358491882320184No Hit
AGGGGG502820.3050279688845023No Hit
GTGGGG488740.29648655485583636No Hit
GGGGTG486770.295291484853246No Hit
TGGGGG476360.2889764195096088No Hit
GGGCGG442810.2686238313944283No Hit
GGTGGG437570.26544506651444183No Hit
GAGGGG435280.26405587346574544No Hit
GGCGGG432130.2621449747306391No Hit
CGGGGG423290.2567823255819597No Hit
GGGGCG413710.25097076688916No Hit
GGGAGG408320.24770100683131133No Hit
GCGGGG401970.24384887763514454No Hit
GGGGGC375230.22762747059490826No Hit
GGGGGA370110.22452150185721156No Hit
GGAGGG365890.22196150418668814No Hit
GGGGAG352300.2137173410723721No Hit
GGGTGT277720.16847453863928238No Hit
GGGTTG267290.16214734060526353No Hit
AGGTGG263100.15960554197031251No Hit
GTGTGG256320.15549255993094072No Hit
AAGGGG251670.15267170941721228No Hit
TGGGTG248370.15066981550424371No Hit
GGTGTG243650.14780650057417957No Hit
GGGGTT236230.1433052724425957No Hit
GGTTGG228290.13848859436108948No Hit
GGGTCG227930.13827020593422018No Hit
TGGGGT226190.13721466187101858No Hit
GTGGGT224290.13606205628476395No Hit
GGGTAG222400.1349155170437001No Hit
TGGTGG221900.13461219978415942No Hit
GTGAGG221600.13443020942843503No Hit
GTGGTG220450.13373257973149144No Hit
AGGGGT219100.13291362313073157No Hit
GGGCGT217710.13207040114920846No Hit
GGCAGG215170.13052954947074172No Hit
TGTGGG213330.12941334195563198No Hit
GGAGGT210330.12759343839838783No Hit
GGGGTA207490.12587059636419667No Hit
GGATGG206800.12545201854603052No Hit
AGGGTG205830.12486358306252156No Hit
GAGTGG204300.12393543224832705No Hit
GGGATG201400.12217619214299102No Hit
GGTCGG200880.12186074219306872No Hit
CAGGGG200600.12169088452772593No Hit
TAGGGG197400.1197496540666655No Hit
TGCGGG197270.11967079157918492No Hit
TTGGGG197120.11957979640132271No Hit
CGGTGG195880.11882756959766179No Hit
GGGGAT195010.11829979756606099No Hit
CGGGTG194610.11805714375842842No Hit
GAGGTG194560.11802681203247437No Hit
GGTAGG193010.11708652852789822No Hit
GAGGGT192240.11661941994820554No Hit
GGGCCG191970.11645562862805357No Hit
TGGCGG191440.11613411233294044No Hit
GGGGCT190970.11584899410897219No Hit
AGAGGG190410.1155092787782866No Hit
GGCCGG189760.11511496634088372No Hit
CTGGGG189440.11492084329477767No Hit
GTTGGG189360.11487231253325114No Hit
GGGTGA189020.11466605679676348No Hit
GTGGCG189020.11466605679676348No Hit
GGCGGT188460.11432634146607791No Hit
ATGGGG186930.11339819065188338No Hit
AGTGGG185270.11239117735020829No Hit
GGCTGG185130.1123062485175369No Hit
GTAGGG184730.11206359470990433No Hit
GGTGGT184210.11174814475998202No Hit
AGCGGG183200.11113544389570983No Hit
GTGCGG181910.11035288536609482No Hit
TGAGGG180430.10945506627785438No Hit
GCGGTG180310.10938227013556462No Hit
TCGGGG179240.10873317120014753No Hit
TGGGCG178610.10835099145312627No Hit
CGGGGT178560.10832065972717218No Hit
AGGCGG177710.10780502038595301No Hit
GGGCAG177610.10774435693404487No Hit
GAAGGG176400.10701032916595639No Hit
AGGGGC176010.10677374170351467No Hit
GTCGGG175030.10617923987481491No Hit
AGGGGA175010.10616710718443327No Hit
TGGAGG173610.10531781885771932No Hit
GGGGAA172710.10477184779054609No Hit
GGTGAG171660.10413488154551064No Hit
CGAGGG170350.10334019032551402No Hit
GGCGTG169830.10302474037559169No Hit
GACGGG169830.10302474037559169No Hit
GGGTGC169720.10295801057849274No Hit
CGCGGG169330.10272142311605101No Hit
GGTGCG169290.10269715773528776No Hit
CGGGCG168900.10246057027284601No Hit
CGGCGG168250.10206625783544311No Hit
CCGGGG168220.10204805879987067No Hit
GGGGTC167740.10175687423071161No Hit
GGGCTG167050.10133829641254544No Hit
GGGTTT166830.10120483681834755No Hit
AGGGCG166600.10106531087895883No Hit
GGAGTG166450.1009743157010966No Hit
GTGGGC164960.10007043026766535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)