FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12550261
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG743780.5926410614090017No Hit
GGGTGG363830.28989835350834536No Hit
GGGGGT354320.2823208218538244No Hit
AGGGGG348830.27794641083559934No Hit
TGGGGG327430.2608949726224817No Hit
GGGGTG327290.26078342115753606No Hit
GTGGGG324620.2586559753617873No Hit
GGTGGG309300.2464490579120227No Hit
GGGGAG302720.2412061390595781No Hit
GGGAGG299710.23880778256324708No Hit
GGGGGA292960.2334294083605114No Hit
GAGGGG275800.21975638594288996No Hit
GGGGCG273940.21827434505146945No Hit
GGCGGG268730.21412303696313567No Hit
GGAGGG262840.20942990747363743No Hit
CGGGGG261290.20819487339745366No Hit
GCGGGG260900.20788412288796224No Hit
GGGCGG256690.20452961097781153No Hit
GGGGGC253880.20229061371711712No Hit
GGGTGT215260.17151834531568708No Hit
GTGGGT193750.15437925952296927No Hit
ATGGGG193440.15413225270773254No Hit
TTGGGG191720.15276176328125765No Hit
GTGGTG190960.15215619818583853No Hit
AGGGGT188760.15040324659383578No Hit
TGGGGT185680.14794911436503194No Hit
AGGTGG185530.14782959493830447No Hit
GGGTTG184890.1473196453842673No Hit
GTTGGG182310.145263911244555No Hit
GGGGTT182220.14519219958851853No Hit
GGTGGT179230.14280977901575115No Hit
TGGGTG178610.14231576538527763No Hit
GGTGTG175360.13972617780618266No Hit
GGTTGG173610.13833178449436231No Hit
AGTGGG170190.1356067415649762No Hit
GGGCGT168050.13390159774366445No Hit
AGGGTG166480.13265062774391706No Hit
GGGTAG166000.13226816557838916No Hit
GTGTGG162610.12956702653434857No Hit
AAGGGG160240.1276786195920547No Hit
TAGGGG159490.1270810224584174No Hit
TGGTGG159440.12704118264950823No Hit
GGGGTA158670.12642764959230726No Hit
GGGGAT156740.12488983296841397No Hit
TGTGGG155490.12389383774568513No Hit
TCGGGG154960.12347153577124811No Hit
GTGAGG154590.12317672118532037No Hit
GTAGGG150590.11998953647258812No Hit
GGCTGG149660.11924851602687786No Hit
GTCGGG149060.118770438319968No Hit
GGATGG148770.11853936742829492No Hit
GGTAGG147900.11784615475327566No Hit
GAGTGG144380.11504143220607126No Hit
GGAGGT143990.11473068169657985No Hit
GGTGGA143600.11441993118708846No Hit
TGGAGG140610.11203751061432109No Hit
GAGGGT140190.11170285621948421No Hit
GGGGCT139940.11150365717493844No Hit
GATGGG139740.11134429793930181No Hit
GGGATG139260.11096183577377396No Hit
AGGAGG138500.11035627067835481No Hit
GTGGAG137620.10965509004155372No Hit
GGGTGA136900.10908139679326193No Hit
TGAGGG135860.10825272876795151No Hit
GGGAAG135690.10811727341766039No Hit
GGGAGT135070.10762325978718688No Hit
GTTGGT133700.10653164902307609No Hit
CTGGGG133020.1059898276219116No Hit
AGGGGA131430.10472292169860054No Hit
GGGCCG131050.10442013915089098No Hit
TGGGGA130400.10390222163507198No Hit
GGGTGC130180.1037269264758717No Hit
GTGGGA129520.10320104099827086No Hit
AGAGGG128380.10229269335514217No Hit
CGGGTG127270.10140824959735897No Hit
GGCGGT126950.10115327482034038No Hit
GGGGAA126700.10095407577579461No Hit
GTGGCG126090.10046803010710294No Hit
CGGTGG126040.1004281902981938No Hit
CGGGGT126000.10039631845106649No Hit
GGGCTG125630.10010150386513875No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)