FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16419413
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG491830.2995417680278826No Hit
GGGGGT358910.2185888131323574No Hit
TGGGGG290330.1768211811226138No Hit
GTGGGG283460.17263710949959052No Hit
GGTGGG279030.16993908369318686No Hit
GGGTGG272530.16598035508333947No Hit
GGGGTG272140.1657428313667486No Hit
GGGGGC245410.1494633212527147No Hit
GCGGGG243230.14813562458048896No Hit
CGGGGG241980.14737433061705676No Hit
AGGGGG232870.141826020211563No Hit
GGGCGG231160.14078457006958775No Hit
GAGGGG230290.14025470947103896No Hit
GGGGCG228420.1391158137017444No Hit
GGCGGG225120.1371059976382834No Hit
GGGGAG210740.12834807188295952No Hit
GGGGTT204200.12436498186628232No Hit
GGGGGA200020.12181921485256507No Hit
GGAGGG199660.1215999621910966No Hit
GGGTGT198120.12066204802814814No Hit
GGGAGG196550.11970586281007732No Hit
GGTGGT193800.11803101609052649No Hit
GGGTTG193710.11797620292515938No Hit
GTGGGT192890.11747679408514787No Hit
GTGTGG189400.1153512613392452No Hit
TTGGGG182140.11092966599963106No Hit
GTGGTG179500.10932181314886227No Hit
TGGTGG176830.10769568924297111No Hit
TGTGGG175760.10704402161027315No Hit
GTTGGG174170.1060756556887874No Hit
TGGGGT170760.1039988457565444No Hit
GGTTGG168760.10278077541505291No Hit
TGGGTG168480.10261024556724409No Hit
GAGGGT164900.10042989965597429No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)