FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8935763
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG464070.519340094404921No Hit
GGGGGT232200.2598546984739859No Hit
CGGGGG218050.2440194530674101No Hit
GGGCGG215900.24161339104450283No Hit
TGGGGG211650.23685722192945358No Hit
GCGGGG209670.2346414066711483No Hit
GGCGGG205360.22981809163918065No Hit
GTGGGG198780.22245442275046912No Hit
AGGGGG197070.22054076411829635No Hit
GGGTGG195610.21890688013995No Hit
GGTGGG194110.21722823221699142No Hit
GGGGGC185430.20751445623613785No Hit
GGGGGA183620.20548888774243454No Hit
GGGGCG182620.20436978912712883No Hit
GGGGTG181120.20269114120417026No Hit
GGAGGG168420.18847858878978774No Hit
GAGGGG167050.1869454236868189No Hit
GGGGAG162840.18223401851638188No Hit
GGGAGG157170.1758887293675985No Hit
GGTTGG121420.13588095387041935No Hit
TCGGGG121210.13564594316120515No Hit
GCCGGG118060.13212078252299214No Hit
GGGGTT115380.12912159823397285No Hit
TTGGGG108590.12152291863604708No Hit
CGGGGT108420.1213326718714451No Hit
GGCCGG107040.11978831578232324No Hit
GGCGGT106710.11941901323927234No Hit
CTGGGG105570.11814324081782385No Hit
GGTGGT105350.11789703912245658No Hit
GTTGGG105330.11787465715015046No Hit
CGGTGG104000.11638625599179388No Hit
GGACGG103530.11586027964260019No Hit
TGGTGG102780.1150209556811209No Hit
TGGCGG102610.11483070891651895No Hit
GGGCCG101850.11398019396888659No Hit
GGCTGG101440.11352136353661126No Hit
TGCGGG100960.11298419620126453No Hit
GGGCGT100840.11284990436742783No Hit
GGGCTG99850.11174199673827517No Hit
ATGGGG99740.11161889589059155No Hit
GGGTGT97960.10962690035534739No Hit
TGTGGG97930.10959332739688822No Hit
GAAGGG97300.10888829526924562No Hit
GCTGGG96920.10846303779542944No Hit
GTAGGG96780.10830636398928666No Hit
AGGGGT95560.10694106367861368No Hit
GGGGCT95490.10686272677554229No Hit
TGGGGT95410.10677319888631781No Hit
GTCGGG95410.10677319888631781No Hit
GTGGGT95220.10656057014940974No Hit
CGGGTG95150.10648223324633835No Hit
GGGGCA94600.10586672900792019No Hit
GCGCGG93630.10478120335107367No Hit
CCGGGG93480.10461333855877779No Hit
CGGCGG93460.10459095658647169No Hit
GGGTTG93320.10443428278032887No Hit
TAGGGG93130.10422165404342082No Hit
TGGGAG92700.10374044163883935No Hit
AGTGGG92700.10374044163883935No Hit
CGGGGC92350.10334875712348236No Hit
GCGGGT92010.1029682635942784No Hit
TGGGTG91990.1029458816219723No Hit
AGCGGG90730.10153581736668708No Hit
GGTGGC90690.10149105342207487No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)