FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18867721
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG409670.21712744215371854No Hit
GTGGGG321680.17049223909978317No Hit
GGGTGG292830.15520157415938046No Hit
GGGGGT282760.14986441658746175No Hit
GGGGTG276750.14667908222725998No Hit
GGTGGG274880.14568797153614896No Hit
GGTTGG246010.1303867064814028No Hit
TGGGGG245120.12991500139312004No Hit
TGGGTG238360.12633216274503953No Hit
AGGGGG228300.12100030523029251No Hit
GGGTTG226410.11999859442483807No Hit
TGTGGG225170.1193413873355452No Hit
GTTGGG217960.11552004611473743No Hit
GGTGTG217270.11515434216988898No Hit
GGTGGT214130.11349012421796995No Hit
GGGGTT213760.11329402210261642No Hit
GGGGGC210110.11135950123493982No Hit
TGGTGG208620.11056979271635403No Hit
TGGGGT203050.10761766087170781No Hit
GGGTGT202000.10706115486867757No Hit
GTGGGT201790.10694985366807151No Hit
GTGGTG199700.10584214171918273No Hit
TTGGGG193100.10234410398584969No Hit
GAGGGG190750.10109859055049628No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)