FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11658510
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG282990.2427325618796913No Hit
GGGTGG201750.17304955779083261No Hit
TGGGGG181060.15530286460276654No Hit
GGTGGG176330.15124574238045857No Hit
GTGGGG171010.14668255205853922No Hit
GGGGTG170230.14601351287600217No Hit
GGGGGT167380.1435689466321168No Hit
CGGGGG158930.1363210221546321No Hit
GGTGGT137020.11752788306567477No Hit
GGCGGG136950.11746784108775479No Hit
AGGGGG136920.11744210881150337No Hit
TGTGGG136750.11729629257941196No Hit
TGGTGG134690.11552934294348077No Hit
GCGGGG134460.11533206215888653No Hit
GGGGGC131840.11308477669959541No Hit
GGGGCG130050.11154941754992706No Hit
GAGGGG122860.1053822486750022No Hit
GGGTTG122350.10494479997872799No Hit
GGGAGG121530.10424145109452236No Hit
GGGTGT121100.10387262180158528No Hit
GGGGGA120440.10330651172405392No Hit
TTGGGG120050.10297199213278539No Hit
TAGGGG119610.10259458541443119No Hit
CGGTGG119580.10256885313817976No Hit
GGGGTT118270.1014452104085342No Hit
GGGCGG118020.10123077477310566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)