FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6730374
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG212750.3161042759287968No Hit
GGGTGG147210.21872484352281168No Hit
GGGGGT144860.21523320992265807No Hit
GGGGTG144290.21438630304942935No Hit
GGGCGG126130.18740414722866813No Hit
GGTGGG122460.18195125560630063No Hit
GGGTGT119640.17776129528611634No Hit
GTGGGG114820.17059973190197156No Hit
GGGGTT100180.1488475974737808No Hit
GGGGGC98770.14675261731368866No Hit
TGGTGG94080.13978420812870132No Hit
TGTGGG93810.13938304171506663No Hit
TGGGGG93810.13938304171506663No Hit
GTGGTG93130.13837269667332008No Hit
GAGGGG92020.136723456972822No Hit
AGGGGG91830.13644115468174578No Hit
CGGGGG91410.1358171180383141No Hit
GGCGGG87320.12974018977251486No Hit
GGGGGA86010.12779378976562075No Hit
GGTGGT85470.1269914569383514No Hit
TGGTTT84170.1250599149467771No Hit
GCGGGG84150.1250301989161375No Hit
GGTGTG84000.12480732868634047No Hit
GGGGAG80490.11959216530908981No Hit
GGTTGG79920.11874525843586106No Hit
GGTATG78070.11599652560169763No Hit
GTTGGG78020.1159222355250986No Hit
AGGTGG77800.11559535918806295No Hit
GGGTTG77730.11549135308082434No Hit
TGGGGT77520.11517933475910848No Hit
GGTTTT77500.11514961872846888No Hit
GTTTTG75640.11238602787898562No Hit
GGGGCG75330.11192542940407174No Hit
GGTGAG75080.11155397902107668No Hit
GGGTAG74930.11133110879127965No Hit
GGGAGG71770.10663597595022209No Hit
GCTGGG71430.10613080342934879No Hit
GGGGTC71420.106115945414029No Hit
GGGCCG71320.10596736526083098No Hit
GTGGGT70970.10544733472463788No Hit
TGGGTG69180.10278774998239325No Hit
GGAGGG68330.10152481868021006No Hit
CGGTGG67860.10082649196017934No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)