FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2975594
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG57500.1932387281329375No Hit
GCAATT47940.16111068915987867No Hit
GTGGGG35820.1203793259429882No Hit
GGGTGG35390.1189342363239071No Hit
GGTGGG34430.11570798973247022No Hit
GGGGTG34000.11426290011338912No Hit
GGGGGT33460.11244813640570589No Hit
TGGGGG33160.11143993434588186No Hit
CGGGGG32740.11002845146212824No Hit
TGCAAT32080.1078104069305154No Hit
TTGGGG31210.10488662095702572No Hit
GGCGGG31200.10485301422169825No Hit
GGTGGT30470.10239972254279313No Hit
GGGGTT30460.10236611580746566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)