FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5819595
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT429530.7380754159009347No Hit
GGGGGG306770.5271329018600092No Hit
TGGGGG167990.28866269903661684No Hit
GGGGGT158250.2719261391900983No Hit
GGGGTG156440.2688159571241642No Hit
GTGGGG156370.26869567383984627No Hit
GCGGGG137510.2362879203793391No Hit
GGGTGG137450.23618482042135233No Hit
GGTGGG137430.2361504537686901No Hit
GGGGCG131910.22666525763390752No Hit
AGGGGG130210.22374409215761576No Hit
CGGGGG129990.22336605897833095No Hit
GGGCGG128400.22063391009168165No Hit
GGCGGG127160.2185031776266218No Hit
GGGGGA124950.21470566250744255No Hit
GGGAGG120190.20652639917382565No Hit
GAGGGG118310.20329593382357364No Hit
GGGGGC116720.2005637849369243No Hit
GGGGAG113420.19489328724765212No Hit
GGAGGG100640.17293299619647073No Hit
TGTGGG96410.16566444915840364No Hit
TGGTGG96250.1653895159371056No Hit
GTGTGG85800.14743293992107698No Hit
TTGGGG84150.14459769107644088No Hit
CGGTGG82450.14167652560014915No Hit
GTGGGT82240.14131567574719545No Hit
GGGGTT81360.1398035430300562No Hit
GGGCTG81290.13968325974573834No Hit
GGGTTG80280.1379477437862944No Hit
GGGTGT79760.13705421081707575No Hit
AGGTGG78610.13507812828899604No Hit
GTGGTG77620.1333769789822144No Hit
TGGGTG77160.13258654597098252No Hit
TGGGGT76800.1319679462230619No Hit
GGTGGT76310.13112596323283665No Hit
CTGGGG74270.12762056466128657No Hit
TGAGGG73840.12688168162904806No Hit
GGTTGG72650.12483686579564386No Hit
TGGGCG71550.1229466998992198No Hit
GAGGTG71490.12284359994123302No Hit
ATGGGG71440.12275768330957737No Hit
GTCGGG70740.12155485046639843No Hit
TGGGGA69960.12021455101257046No Hit
AGGGTG69780.11990525113861016No Hit
GGGATG69610.119613134590981No Hit
TCGGGG69360.11918355143270279No Hit
AGGGGT69290.1190632681483849No Hit
GTTGGG68090.11700126898864956No Hit
GAGGGT66890.11493926982891421No Hit
CGTGGG66450.11418320347034458No Hit
TAGGGG66020.11344432043810608No Hit
GGGTGC65660.1128257206901855No Hit
GACGGG65560.11265388742687421No Hit
GGTGTG65140.11193218772096683No Hit
GGGTAG64270.1104372383301587No Hit
GCGGGT63820.10966398864525798No Hit
GGGGTA63820.10966398864525798No Hit
GGCGTG63760.10956088868727118No Hit
GGGGTC63480.10907975554999962No Hit
GGGGAT62670.10768790611717825No Hit
TGGGGC62600.10756762283286037No Hit
TGGCGG61830.10624450670536352No Hit
GTGAGG61810.10621014005270125No Hit
GGCGGT61470.10562590695744291No Hit
GGGTGA61370.10545407369413164No Hit
GTGGGA61310.10535097373614485No Hit
CGGGGT60930.104698007335562No Hit
GTGCGG60840.10454335739858187No Hit
CAGGGG60770.10442307411426396No Hit
GTGGAG60690.10428560750361494No Hit
GGTGAG60480.10392475765066125No Hit
CGGCGG59900.10292812472345585No Hit
GGGCGT59760.10268755815482004No Hit
GTGGGC58820.10107232547969403No Hit
GGGGCT58660.10079739225839598No Hit
TGGGAG58610.10071147562674035No Hit
GCGGGC58610.10071147562674035No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)