FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9890987
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG291840.29505649941709555No Hit
GTGGGG183520.18554265615757054No Hit
GGGGGT181110.18310609446761986No Hit
GGTGGG164410.16622203628414434No Hit
GGGGTG162430.16422021381688198No Hit
GGGTGG162260.16404834017070288No Hit
TGGGGG162200.16398767888381613No Hit
GGGGGC158330.16007502587962152No Hit
CGGGGG147650.1492773168137821No Hit
GGGCGG146370.14798320936019832No Hit
GCGGGG140680.1422304973204393No Hit
AGGGGG139620.14115881458544027No Hit
GAGGGG138000.13952095983949833No Hit
GGGGAG130570.1320090704800239No Hit
GGGGCG130390.13182708661936365No Hit
GGCGGG128650.13006790929964826No Hit
TGGTGG123410.12477015691153978No Hit
GGTGGT119710.12102937755352422No Hit
GTGGGT116740.11802664385263067No Hit
TTGGGG116230.11751102291409342No Hit
GGGGGA115340.11661121382527345No Hit
GGAGGG114000.11525644508480297No Hit
GGGGTT113840.11509468165310499No Hit
GGGTTG113710.11496324886485039No Hit
GGGAGG112780.11402299891810595No Hit
TGGGGT110680.11189985387707009No Hit
GGGTGT109790.11100004478825015No Hit
GTGGTG108030.10922064703957249No Hit
GTTGGG107240.10842194009556376No Hit
GTGTGG106870.10804786215976221No Hit
TGTGGG105740.1069054079233953No Hit
GGTGTG102040.10316462856537977No Hit
GTGGGC100380.10148633296151335No Hit
GCGTGG100190.10129423888637201No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)