FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7792465
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG221280.2839666267349292No Hit
GGGTGG144020.18481956608082295No Hit
GTGGGG137870.1769273265904948No Hit
TGGGGG136010.1745404053787858No Hit
GGGGGT130970.1680726188696388No Hit
GGGGTG129880.16667383170793837No Hit
GGTGGG127000.16297795370271154No Hit
AGGGGG120970.15523970912926782No Hit
GGGGAG109630.14068718948368714No Hit
GGGGGC107960.13854409355704517No Hit
GCGGGG105830.13581068378234615No Hit
GGAGGG100200.1285857555985173No Hit
GGGCGG99560.12776444937513354No Hit
GGGGGA98790.12677631532512496No Hit
GGCGGG98480.12637849512317348No Hit
GAGGGG97230.1247743814056271No Hit
CGGGGG94000.12062935155948727No Hit
GGGAGG93340.1197823795166228No Hit
GTTGGG91170.11699763810296229No Hit
GGGGCG90660.11634315970620336No Hit
GTGTGG89390.11471338016917625No Hit
GGGTTG89330.11463638271073401No Hit
GGTGGT88540.11362258284124471No Hit
GGTGTG88400.11344292210487954No Hit
GGGGTT87080.11174897801915055No Hit
GGGTGT86850.11145382109512203No Hit
GTGGGT83940.10771944436067406No Hit
TTGGGG83370.10698796850547293No Hit
GTGGTG79540.10207296407491083No Hit
GGTTGG78240.1004046858086626No Hit
AGGTGG78120.10025069089177815No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)