FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4332796
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG275080.6348787249618953No Hit
GGGTGG131590.3037068904236433No Hit
CAATTT128480.29652907729789263No Hit
AGGGGG125540.2897436205166364No Hit
GGGGGT122200.28203497233656977No Hit
GTGGGG121020.27931155771007915No Hit
GGGGTG118780.274141685876741No Hit
GGGCGG118340.2731261753380496No Hit
GAGGGG118100.2725722604987634No Hit
TGGGGG115090.26562524522271536No Hit
GGGGGA108660.2507849434868385No Hit
GGGAGG107010.24697677896674572No Hit
GGGGCG106180.2450611568142142No Hit
CGGGGG105560.24363021014605812No Hit
GGCGGG101120.23338278561926296No Hit
GGGGGC101000.2331058281996198No Hit
GGTGGG99690.23008237636851586No Hit
GGAGGG98750.22791287658131149No Hit
GCGGGG98150.2265280894830959No Hit
GGGGAG92160.21270329828591053No Hit
GTGGTG67480.15574238897931036No Hit
TGGTGG66100.15255737865341457No Hit
TTGGGG62810.14496412939819922No Hit
AGGGTG61440.1418021988572737No Hit
GGGATG61430.14177911907230342No Hit
TAGGGG61300.14147908186769007No Hit
TGGGGT60680.14004813519953396No Hit
GGGTCG60200.13894030552096154No Hit
GGGTGT60160.13884798638108048No Hit
GGGTTG59990.13845563003658606No Hit
GGGGTT58860.13584761433494677No Hit
GTGTGG58780.13566297605518468No Hit
CAGGGG58750.13559373670027391No Hit
GTGGGT58440.13487826336619585No Hit
AGGTGG58240.13441666766679067No Hit
TGTGGG57880.13358579540786134No Hit
GGGTAG56740.13095469992125178No Hit
AGGGGT56050.12936219475830388No Hit
TGGAGG55880.12896983841380946No Hit
GGAAGG55570.12825436507973142No Hit
ATGGGG55040.12703113647630768No Hit
GTGAGG54750.12636182271217017No Hit
GGTAGG54520.1258309876578542No Hit
GAGAGG53660.12384612615041189No Hit
GGGACG53620.12375380701053085No Hit
AAGGGG53280.12296909432154203No Hit
GGTGTG53050.12243825926722607No Hit
GGGGTA52930.12216130184758295No Hit
GAGTGG52690.12160738700829674No Hit
GTTGGG52470.12109963173895101No Hit
TGGGTG51770.11948404679103285No Hit
GAGGTG51390.118607014962163No Hit
CCGGGG51360.11853777560725222No Hit
GGAGGT51210.11819157883269833No Hit
CTGGGG51020.11775306291826339No Hit
CGGGTG51000.11770690334832287No Hit
GGTGGT50820.1172914672188582No Hit
GGCAGG50780.11719914807897718No Hit
GAGGGT50120.11567588227094006No Hit
GTGGGA49990.11537584506632668No Hit
GGGCCG49810.11496040893686202No Hit
AGAGGG49590.11445265366751632No Hit
CGGGCG49460.11415261646290292No Hit
TGGCGG49400.11401413775308138No Hit
GTCGGG49320.11382949947331931No Hit
TGGGGC48980.1130447867843305No Hit
GGGTGC48730.112467792160074No Hit
AGGCGG48670.11232931345025243No Hit
GGGGAT48590.11214467517049037No Hit
GGGCAG48380.11165999968611492No Hit
GGGAAG47510.10965205839370236No Hit
GGCCGG47500.1096289786087321No Hit
CGGTGG47400.10939818075902952No Hit
AGGGGC47390.10937510097405925No Hit
GGGCGT47390.10937510097405925No Hit
GACGGG47280.1091212233393864No Hit
GGTTGG47170.10886734570471354No Hit
GGCGGT46990.10845190957524888No Hit
GGGGCT46960.1083826702203381No Hit
GTGGCG46740.10787491495099238No Hit
GGGCTG46370.10702096290709279No Hit
GGGGAA46100.10639780871289578No Hit
CGGGGC45980.10612085129325266No Hit
GGATGG45870.10586697365857982No Hit
GGCGTG45850.1058208140886393No Hit
GCGAGG45820.10575157473372851No Hit
CGCGGG45710.10549769709905567No Hit
TGAGGG45590.10522073967941256No Hit
GAGGGA45540.10510534075456127No Hit
GGTGGA45230.1043898674204832No Hit
GTAGGG45090.1040667504308996No Hit
GCCGGG44950.10374363344131596No Hit
TGCGGG44860.10353591537658362No Hit
TGGGGA44650.10305123989220817No Hit
GGAGTG44560.10284352182747583No Hit
GAAGGG44260.10215112827836804No Hit
TGGGCG43890.10129717623446846No Hit
GGGGCA43830.1011586975246469No Hit
GATGGG43520.10044322419056886No Hit
GGCTGG43330.10000470827613392No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)