FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24248814
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1120710.4621710571081951No Hit
GGGTGG595500.2455790208956199No Hit
GGGGGT593170.24461814915978983No Hit
GGTGGG584840.2411829296063717No Hit
TGGGGG561890.23171854920409715No Hit
GTGGGG555920.22925657312559697No Hit
GGGGTG553950.22844416225882222No Hit
GGGCGG467690.19287128846796384No Hit
AGGGGG457080.1884958167438622No Hit
GGGGCG449120.18521318197252862No Hit
CGGGGG444210.1831883406751357No Hit
GCGGGG444150.18316359719695982No Hit
GGCGGG438710.18092018850901326No Hit
GAGGGG436920.18018200807676615No Hit
GGGGGC429640.17717979939142592No Hit
GGGGGA403540.16641638638491763No Hit
GGAGGG402340.16592151682140002No Hit
GGGAGG398750.16444103204387645No Hit
GGGGAG369890.15253941904127766No Hit
GGGTGT360830.1488031538367196No Hit
GGTGGT357430.147401023406753No Hit
GGGTTG345000.1422749995113163No Hit
GGGGTT333140.13738403865855048No Hit
GTGGGT327730.13515300170969186No Hit
GGTTGG327110.13489731910187444No Hit
GGTGTG323230.1332972408465008No Hit
GTGTGG323140.13326012562923695No Hit
GTGGTG312690.12895063651360433No Hit
TGGTGG310200.12792378216930528No Hit
TGTGGG308090.1270536365201201No Hit
TGGGTG302420.12471537783249936No Hit
GTTGGG295440.12183688653803852No Hit
TGGGGT290950.11998524958787675No Hit
TTGGGG290070.11962234524129717No Hit
GGGCGT275940.11379525613087717No Hit
GGTAGG272140.11222816917973803No Hit
GGGTAG269600.11118069527029241No Hit
GGGGTA268240.11061984309830575No Hit
GGGGCT264720.10916822571198741No Hit
TAGGGG259150.10687120615465978No Hit
AGGTGG258360.106545417025344No Hit
AGGGGT256250.10567527137615884No Hit
GGCTGG253050.10435561920677852No Hit
GATGGG252950.10431438007648539No Hit
AGTGGG252640.10418653877257668No Hit
GTGGCG250630.10335763225368466No Hit
GGTCGG250060.10312256921101379No Hit
TGAGGG249710.1029782322549878No Hit
TCGGGG249290.10280502790775664No Hit
GCTGGG249110.102730797473229No Hit
GTGCGG249110.102730797473229No Hit
GCGGGT248180.10234727356150285No Hit
GGGCCG247620.1021163344318613No Hit
CGTGGG242990.10020696269928914No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)