FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20412553
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1076540.5273911597437125No Hit
GGGTGG506480.24812182973878869No Hit
GGGGGT498900.24440842848025918No Hit
TGGGGG497040.24349722447750657No Hit
GTGGGG464760.2276834259781224No Hit
GGGGTG456260.22351932166446795No Hit
GGTGGG454410.22261301660796667No Hit
AGGGGG453450.2221427177678363No Hit
CGGGGG414190.20290945478500408No Hit
GGGGAG408140.19994559230293243No Hit
GGGAGG407950.1998525123241566No Hit
GAGGGG406660.1992205482577314No Hit
GGAGGG400230.19607052581810813No Hit
GCGGGG383370.18781090243831822No Hit
GGCGGG382580.18742388568446092No Hit
GGGGGA369190.18086419665389233No Hit
GGGGGC347560.1702677759122046No Hit
GGGCGG344730.16888137412307025No Hit
GGGGCG317790.15568361292191132No Hit
GGGGTT317000.15529659616805405No Hit
TTGGGG304550.14919740808511311No Hit
GGTGGT294640.14434255235001717No Hit
GTGGTG292310.1432010978734507No Hit
GTTGGG282980.13863038102093353No Hit
GGGTGT278080.13622989735776803No Hit
TGTGGG273840.13415274414719217No Hit
TGGGGT269240.1318992288715674No Hit
ATGGGG264600.12962611781093722No Hit
TGGTGG263440.1290578400457797No Hit
GTGTGG260610.12767143825664531No Hit
GGGTTG259400.12707866576023097No Hit
AGGGGT259120.12694149526519294No Hit
GGTGTG257390.12609397756370797No Hit
TGGGTG257350.12607438177870256No Hit
GTGGGT256200.12551100295979636No Hit
AGTGGG250880.12290476355407381No Hit
CGGGGT249140.12205234690633748No Hit
GGATGG248790.12188088378753996No Hit
GGAGGT248040.12151346281868809No Hit
GGGTAG243050.11906888863926036No Hit
GAGTGG241960.11853490349786232No Hit
GGTTGG236850.11603154196341829No Hit
GGGGTA236300.11576209991959359No Hit
GGGATG233620.1144491823242296No Hit
GTAGGG229740.11254839117870263No Hit
GGAAGG228080.11173516610097718No Hit
TGGAGG223470.10947675187910105No Hit
GAGGGT221730.10862433523136474No Hit
AGGTGG220620.10808055219746397No Hit
TGGGAG220410.10797767432618546No Hit
CGGTGG219400.10748288075479828No Hit
GAGGTG218280.10693419877464617No Hit
AAGGGG217830.10671374619333504No Hit
CTGGGG216170.10590052111560959No Hit
GGGGAT216030.10583193586809057No Hit
GGGTTT215500.1055722917167686No Hit
TGAGGG214610.10513628550039772No Hit
GGGGAA213960.10481785399405945No Hit
GATGGG212110.10391154893755816No Hit
GGTAGG209460.10261332818094827No Hit
GGCTGG206040.10093788856298377No Hit
GCGTGG206040.10093788856298377No Hit
GGGTGA205320.100585164432886No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)