FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7364248
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG213700.2901857732113313No Hit
GGGGTG154450.20972949308605573No Hit
AGGGGG130090.17665075918138554No Hit
GGTGGG124850.16953530082093923No Hit
TGGGGG116440.15811526173480306No Hit
GTGGGG115850.15731409371330243No Hit
GGAGGG107910.14653227322056508No Hit
GGGGCG101600.13796384912621085No Hit
GGGGGT96970.13167671702528216No Hit
GGGGGC92560.1256883255425401No Hit
ATGGGG89240.12118005803172299No Hit
GGGGAG88170.11972709229781506No Hit
GCGGGG86690.11771738268455924No Hit
GGGTGG86110.11692979378206708No Hit
TGGGGT84830.11519166654898097No Hit
TGGTGG84220.11436334028946336No Hit
CGGGGG83620.11354859314895425No Hit
GAGGGG83520.11341280195886938No Hit
TTGGGG83390.11323627341175907No Hit
GCTGGG81350.11046613313402807No Hit
GGGGTT80910.10986865189765473No Hit
TGCGGG80580.10942054097037471No Hit
GGGGGA79820.10838852792572982No Hit
TGTGGG77430.10514311848270183No Hit
TGGGGC76880.10439626693723514No Hit
GGGGAT76230.10351362420168359No Hit
GGCAGG75260.10219644965786052No Hit
GGGCGG74860.1016532848975211No Hit
GGCGGG74450.10109654101817321No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)