FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24886798
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1650850.6633436732198332No Hit
GGGGGT950910.3820941528918264No Hit
GTGGGG801940.3222351063403175No Hit
TGGGGG787860.3165774881927358No Hit
GGGTGG762150.30624670960080924No Hit
GGGGTG740630.2975995545911531No Hit
GGTGGG722740.2904110042601704No Hit
AGGGGG687260.27615444943941764No Hit
GGGGGC637440.25613580340869885No Hit
CGGGGG623390.25049023984523844No Hit
GGCGGG609160.2447723487770504No Hit
GCGGGG601430.24166628426847037No Hit
GGGGGA586400.2356269376237152No Hit
GGGCGG578250.23235210893743746No Hit
GAGGGG574480.23083724953286477No Hit
GGAGGG531550.2135871396553305No Hit
GGGGTT516740.20763619329413127No Hit
GGGAGG506070.20334877954166705No Hit
GGGGCG503490.202312085307238No Hit
GGGGAG500220.2009981356380198No Hit
GTGGGT463120.1860906332747186No Hit
GGGTGT462650.18590177812348538No Hit
TGGGGT462320.18576917769815143No Hit
TTGGGG458030.18404537216881015No Hit
GGTGGT456760.1835350614410098No Hit
TGGTGG436190.17526963492852718No Hit
GGGTTG428540.17219571597760386No Hit
GTTGGG424570.1706004926788894No Hit
GGTTGG400670.16099700732894606No Hit
TGTGGG393050.15793514296214403No Hit
GTGTGG383000.1538968572815193No Hit
GTGGTG370470.14886205931353644No Hit
TCGGGG369610.14851649456872676No Hit
AGGGGT359610.14449829986163748No Hit
TGGGTG354890.14260171195989133No Hit
ATGGGG352120.1414886720260276No Hit
CGGGGT349910.14060065099576088No Hit
GGTGTG349530.1404479595968915No Hit
GGGGCT349520.1404439414021844No Hit
GCGGGT346480.13922241021122927No Hit
GGGTCG344520.13843484404863976No Hit
GAGGGT343770.13813347944560808No Hit
GGGCGT341240.1371168761847145No Hit
AGGTGG337770.13572256262135451No Hit
GGCGGT336810.1353368159294739No Hit
CGGTGG333510.13401081167613446No Hit
GGGGAT332200.13348442816950576No Hit
GGGGTA322210.1294702516571236No Hit
TGCGGG319740.12847775756447255No Hit
GGCTGG318060.12780270085368153No Hit
GGAGGT316870.1273245356835379No Hit
GAGTGG316300.12709549858523383No Hit
CTGGGG315870.126922716212829No Hit
TGGCGG308510.12396532490841128No Hit
GTAGGG308020.12376843336776391No Hit
TAGGGG305100.12259512051329383No Hit
GGGGTC303190.12182764532423977No Hit
GAGGTG300440.12072264177979022No Hit
GGGTTT299870.12049360468148615No Hit
GGGCTG299340.12028064036201042No Hit
GTGGTT297170.11940869211057203No Hit
GTCGGG295470.11872559901036686No Hit
GTGCGG294770.11844432538087062No Hit
GCGTGG294670.11840414343379972No Hit
GGGTGC292720.11762059546591731No Hit
GGGAGT289970.11651559192146776No Hit
GGATGG289670.11639504608025508No Hit
GGTCGG289370.1162745002390424No Hit
GTGGGA288870.11607359050368794No Hit
GGTAGG287380.11547487949233164No Hit
GTGAGG287130.11537442462465441No Hit
GCTGGG286420.11508913280045108No Hit
GGGATG285990.11491635042804624No Hit
GGGTGA285960.11490429584392498No Hit
TGGGTT285150.11457882207265072No Hit
GGTGGC284440.11429353024844739No Hit
CGGGTG283210.11379929229947541No Hit
GTTGGT282690.11359034617470676No Hit
GTGGCG282100.1133532726869885No Hit
AGGGTG280810.11283492556977398No Hit
GCCGGG278450.1118866316189009No Hit
GGTGGA275350.11064099125970323No Hit
AGTGGG272250.10939535090050558No Hit
CCGGGG271900.10925471408575745No Hit
TGGGGA271140.10894933128801866No Hit
TTGGGT269600.10833052930312691No Hit
CGCGGG266080.10691612476623148No Hit
TGGGGC265830.10681566989855425No Hit
GGGCCG263780.10599193998360094No Hit
GCGGTG262860.10562226607054874No Hit
GGGTAG262690.10555395676052821No Hit
ACGGGG262210.10536108341458793No Hit
TGGGAG260390.10462977197789768No Hit
GGCCGG259440.1042480434807242No Hit
TGAGGG255800.1027854206073437No Hit
GGTGTT255280.10257647448257505No Hit
CAGGGG254580.1022952008530788No Hit
GGGGCA254430.10223492793247246No Hit
GGGGAA253900.10202196361299674No Hit
TGGGCG252700.10153978024814603No Hit
AGGGGC252260.10136297968103411No Hit
GGGAAG251180.10092901465266846No Hit
CGTGGG250650.10071605033319271No Hit
AAGGGG250290.10057139532373752No Hit
CGGGGA249010.10005706640123008No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)