FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26728586
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1167470.4367870414095231No Hit
GGGGGT620650.2322045767778363No Hit
TGGGGG588580.22020618673954545No Hit
GGGTGG544280.20363217118930274No Hit
GTGGGG525700.19668081207139054No Hit
GGTGGG516650.19329492401880144No Hit
CGGGGG496460.18574121354567727No Hit
GGGGTG494900.18515756875429176No Hit
GGGGGC466260.174442448994496No Hit
AGGGGG457050.17099669993766226No Hit
GGGGGA442570.1655792790535197No Hit
GGAGGG438880.16419873464312704No Hit
GAGGGG436860.16344298946453809No Hit
GGGGCG433380.16214101262221653No Hit
GGGCGG422930.15823134078248657No Hit
GGGAGG412830.15445261488954187No Hit
GCGGGG408990.1530159507876698No Hit
GGGGAG397300.14864235616504368No Hit
GGCGGG383670.14354294686595095No Hit
TTGGGG376080.14070329047709446No Hit
GGGGTT374860.14024685031972886No Hit
GTGGGT367340.1374333831202294No Hit
TGGGGT357390.13371077691876407No Hit
TGGTGG350840.13126021705749794No Hit
GGTGGT345530.12927357997912794No Hit
GTGTGG338770.12674445254979072No Hit
GGGTGT332010.12421532512045344No Hit
GGTTGG329510.1232799969291305No Hit
AGTGGG311230.11644087719417705No Hit
GTTGGG309220.1156888733283534No Hit
GGGTTG308530.11543072274754827No Hit
AGGGGT306920.11482837139233629No Hit
CGGGGT302100.11302505863946563No Hit
TGGGTG295710.11063435978244415No Hit
TGAGGG292020.10925381537205148No Hit
TAGGGG287510.10756648331490487No Hit
TGTGGG286960.10736071111281383No Hit
GGGGTA285940.10697909721075406No Hit
CTGGGG284190.10632436747682798No Hit
CGGTGG282400.10565467249184077No Hit
GTGGTG282250.10559855280036139No Hit
GGTGTG280270.10485777287283361No Hit
TCGGGG275890.10321907788163578No Hit
ATGGGG274010.10251571108176093No Hit
TGGGGA272890.10209668405204825No Hit
GGAGGT271840.1017038462116926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)