FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7222507
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG221400.3065417589764884No Hit
TGGGGG128450.17784683351639535No Hit
GGTGGG127120.1760053676652719No Hit
GGGGTG123340.17077172787786846No Hit
GGGTGG121850.16870873230029407No Hit
GGGGGT119120.1649288813427249No Hit
GGGGCG108730.150543294731317No Hit
GAGGGG102660.14213901073408444No Hit
AGGGGG102050.14129442865199024No Hit
GGGCGG99510.13777764424458155No Hit
GGAGGG97840.13546542772474987No Hit
GGGGGC95840.13269630614411312No Hit
GTGGGG94670.1310763700194406No Hit
GGGGGA94110.13030101597686233No Hit
GGGGCT85250.11803380737464152No Hit
CGGGGG84030.1163446432104531No Hit
TGGTGG81220.11245402738965847No Hit
GGCGGG79200.10965721459321534No Hit
CGGGGT77200.1068880930125786No Hit
GCCGGG76260.10558660586967933No Hit
GGCCGG76100.10536507614322839No Hit
GATGGG75830.10499124472984243No Hit
GTTGGG74320.10290055793646168No Hit
TTGGGG74130.10263749138630118No Hit
GGGGTT73820.10220827754130249No Hit
TGGGGT73700.10204213024646429No Hit
GGGGAG73670.10200059342275473No Hit
AGGTGT73530.10180675491211015No Hit
TGTGGG72430.10028373804275995No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)