FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8492247
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG247840.2918426654335419No Hit
TGGGGG151460.17835091230860337No Hit
GGGGTG146710.17275757523303314No Hit
GTGGGG143600.169095411379344No Hit
GGGTGG138240.16278377206880582No Hit
GGGGGT136970.16128829036649547No Hit
GGCGGG136370.16058176357800238No Hit
GGTGGG124160.1462039434321682No Hit
GGGGGC123640.14559162021547417No Hit
AGGGGG120450.141835252789986No Hit
GCGGGG119060.140198465729977No Hit
TGTGGG116950.13771384652377636No Hit
GGGCGG114560.13489951481627888No Hit
GGGGCG113530.1336866438293658No Hit
GAGGGG112990.133050769719722No Hit
GGGGGA108270.12749275898357643No Hit
GGAGGG104760.1233595772708919No Hit
TTGGGG103510.12188764646153133No Hit
CGGGGG101450.11946190448770506No Hit
GGGGAG99930.1176720366235226No Hit
GGTGGT98440.1159174950987648No Hit
GGTGTG97550.11486948036250005No Hit
GGGAGG95510.11246728928162358No Hit
GGGTTG94890.11173721160018073No Hit
GGGGTT94090.11079517588218994No Hit
GGGTGT93140.10967650846707591No Hit
TCGGGG91390.1076158053339711No Hit
GGGGTA89950.10592014104158769No Hit
GGGTAG88940.10473082094762434No Hit
GTGGGT88490.10420092585625453No Hit
AGGGGA86680.1020695700443004No Hit
GTGTGG86570.10194004013307667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)