FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13651351
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG674290.49393646094075233No Hit
GTGGGG373060.27327698188992433No Hit
GGGGGT371760.2723246951895091No Hit
TGGGGG356380.2610584109953659No Hit
GGGGTG342760.2510813764879388No Hit
GGTGGG338150.24770442134262025No Hit
GGGTGG337010.24686933915917922No Hit
CGGGGG305910.2240877111723228No Hit
GGCGGG296990.21755355935101223No Hit
AGGGGG266720.19537992979595942No Hit
GGGGGC262130.19201762521526258No Hit
GGGGCG253660.18581311109794188No Hit
GGGGGA250700.18364482753391953No Hit
GCGGGG242810.17786517979063024No Hit
GGGCGG241420.17684696554941706No Hit
GAGGGG239560.1754844630395922No Hit
GGAGGG237890.1742611408936742No Hit
GGGGTT237100.17368244359111418No Hit
GGGGAG235810.17273748217300983No Hit
GGGAGG232880.17059117445592015No Hit
GTTGGG227130.16637913712716051No Hit
GTGGGT221730.16242348467928192No Hit
TGTGGG221580.16231360544461865No Hit
TGGGGT219740.16096575349941555No Hit
TTGGGG215890.15814551980972433No Hit
GGGTGT207830.15224134226714997No Hit
GTGGTG205780.15073965939341827No Hit
GGTGGT205260.1503587447132522No Hit
GGGTTG203630.14916472369657774No Hit
TGGTGG203350.1489596157918729No Hit
GGTTGG200170.14663017601701106No Hit
GTGTGG192200.1407919260152347No Hit
TGGGTG191530.1403011321004053No Hit
GTCGGG185960.13622094985324162No Hit
TGCGGG182240.13349594483359192No Hit
GGTGTG179910.1317891540551554No Hit
CTGGGG175250.1283755724982824No Hit
GGCGGT173010.12673470926064387No Hit
CGGGGT168320.1232991518568382No Hit
GTAGGG166860.12222966063944879No Hit
ATGGGG165720.12139457845600776No Hit
CGTGGG164960.12083785700038041No Hit
TAGGGG159520.11685290342325824No Hit
GGCTGG159200.11661849438930989No Hit
GCGGGT158780.11631083253225266No Hit
GGGTAG157140.11510948623326732No Hit
GGGGAT155110.1136224539241574No Hit
GGGGTA154350.11306573246853004No Hit
TGAGGG153990.11280202230533813No Hit
TCGGGG153680.11257493855370065No Hit
AGTGGG153380.11235518008437406No Hit
CGGGTG152990.1120694940742495No Hit
CGGTGG152560.1117545069348814No Hit
GGCGTG150670.11037002857812388No Hit
GGGTCG150270.11007701728568842No Hit
AGGGGT148360.10867788836430915No Hit
GGGTTT146170.10707365153822504No Hit
TTTGGG144770.10604811201470096No Hit
GCGGTG143800.105337559630545No Hit
GTGAGG142020.10403365937920724No Hit
GGGCGT141730.10382122619219153No Hit
TTGGGT141690.10379192506294799No Hit
GCTGGG141390.1035721665936214No Hit
GGTAGG140340.10280301195097832No Hit
GCGTGG140120.10264185574013884No Hit
TGGGTT140110.10263453045782794No Hit
GTGGCG139570.1022389652130401No Hit
AGCGGG139370.10209245956682236No Hit
AGGGTG138550.10149178641732969No Hit
GTGGGA138440.10141120831190995No Hit
GGGAGT138370.10135993133573373No Hit
TGGGGA138300.10130865435955753No Hit
GGAGGT137890.10100831778481119No Hit
GGTCGG136620.10007800693132864No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)