FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7905618
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG615760.778889139343692No Hit
GGGGGT281050.3555066789212431No Hit
GTGGGG271430.3433381172730582No Hit
TGGGGG268140.3391765197863089No Hit
CGGGGG258190.32659053346620087No Hit
GGGGTG252190.31900099397668846No Hit
GGCGGG251900.31863416623469537No Hit
GGTGGG249040.3150164857446945No Hit
AGGGGG242660.3069462754208463No Hit
GGGTGG239200.30256964098189415No Hit
GAGGGG226250.2861888849170299No Hit
GGAGGG225490.2852275432483583No Hit
GCGGGG216570.2739444278739499No Hit
GGGGAG209120.26452074967447203No Hit
GGGGGC194770.24636910106205487No Hit
GGGGGA194710.24629320566715973No Hit
GGGGCG192340.24329533756880234No Hit
GGGAGG190960.2415497434862145No Hit
GGGCGG186620.2360599765888005No Hit
GGTTGG155230.19635403582616817No Hit
TGGGGT147120.18609550828284394No Hit
GGGTTG141740.1792902212072478No Hit
GTGGGT140010.17710190398777173No Hit
GGGGTT137250.17361071582259602No Hit
GTGGTG137010.17330713424301553No Hit
GTTGGG135480.17137180167318988No Hit
GTCGGG134040.1695503121957069No Hit
GTGTGG132740.16790591197297922No Hit
GGGTGT130910.16559110242867794No Hit
TGTGGG128580.16264383126025062No Hit
CGGGGT127710.1615433480342713No Hit
TTGGGG126870.1604808125057396No Hit
GGTGTG126470.15997484320643876No Hit
GTAGGG125140.15829249528626352No Hit
TGGTGG122030.1543585839841996No Hit
GGGTAG121770.15402970393965404No Hit
GGTGGT120510.15243590064685644No Hit
CGTGGG119170.15074090349419866No Hit
ATGGGG119010.15053851577447835No Hit
AGGGGT117140.148173109300247No Hit
TGGGTG116770.14770508769839372No Hit
GGCTGG115180.14569385973367294No Hit
GGCGGT115160.1456685612687079No Hit
GGGGTA114110.14434039185804323No Hit
CGGTGG113830.14398621334853265No Hit
TAGGGG111590.14115278527244804No Hit
GATGGG110760.14010289897639883No Hit
GGGGAT109450.1384458495211886No Hit
CTGGGG108150.13680144929846091No Hit
GGCCGG108130.13677615083349587No Hit
TGAGGG107660.13618163690681742No Hit
GAGGGT105120.13296873185625716No Hit
GGGAGT104010.13156466705069736No Hit
GGAGGT103440.13084366079919368No Hit
GTGGAG103210.1305527284520957No Hit
GGGTGA102240.12932575290129122No Hit
CCGGGG102030.12906011901915826No Hit
CGCGGG101800.1287691866720603No Hit
GGATGG101070.1278457927008363No Hit
AGGTGG100500.12712478644933262No Hit
TGCGGG100320.12689710026464726No Hit
GGTAGG99640.12603695245583585No Hit
CAGGGG99160.12542978929667484No Hit
GCTGGG98190.12420281374587033No Hit
AGTGGG97580.12343121056443658No Hit
GAAGGG97530.12336796440202398No Hit
GGGTCG96650.12225483194356215No Hit
GGTCGG96620.1222168842461146No Hit
GGCGTG96280.12178681034170889No Hit
TGGGAG95350.12061043172083448No Hit
GGTGGA94880.120015917794156No Hit
GGGCGT94820.11994002239926087No Hit
GCAGGG94480.11950994849485519No Hit
AGGGTG94150.11909252382293199No Hit
GAGGTG94010.1189154345681767No Hit
CGAGGG93920.11880159147583402No Hit
AGCGGG93860.11872569608093889No Hit
TCGGGG93670.118485360663771No Hit
GGAGTG92470.11696745276586853No Hit
GCGTGG92440.11692950506842095No Hit
GTGGCG91910.11625909574684737No Hit
GTGAGG91890.11623379728188234No Hit
CGGGTG91430.11565193258768638No Hit
GGGGCT91150.1152977540781758No Hit
GCGGGT91120.11525980638072823No Hit
AAGGGG90990.11509536635845546No Hit
GGGATG90190.11408342775985382No Hit
TGGCGG89940.11376719694779079No Hit
GGCAGG89630.11337507074083265No Hit
TGGAGG88910.11246432600209118No Hit
GAGTGG88210.11157887972831472No Hit
AGAGGG87770.11102231349908381No Hit
GGTGAG86850.10985858411069191No Hit
GTGCGG86740.10971944255338417No Hit
CGGGGA86400.1092893686489785No Hit
CGGGGC86300.10916287632415328No Hit
GGGCTG84570.10697455910467721No Hit
GGTTGT84270.1065950821302016No Hit
GGGAGA83400.1054945989042223No Hit
TGGGGA82380.10420437719100518No Hit
GGGGAA82160.10392609407638972No Hit
CGGAGG82020.10374900482163443No Hit
GTGGTT81510.10310389396502588No Hit
GGGCAG81320.10286355854785799No Hit
GACGGG81210.10272441699055027No Hit
GCCGGG81050.10252202927082993No Hit
GGGGTC80700.10207930613394171No Hit
AGGAGG80590.10194016457663398No Hit
GGGAAG79980.10116856139520024No Hit
ACGGGG79910.10108001676782258No Hit
GTGGGA79530.10059934593348678No Hit
GTGGGC79380.100409607446249No Hit
GGAAGG79340.1003590105163189No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)