FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6591107
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG445800.6763658972612643No Hit
CGGGGG208390.3161684372594771No Hit
GGCGGG205780.312208556165148No Hit
TGGGGG197790.30008616155070766No Hit
GTGGGG192340.29181744432308565No Hit
GGGGCG191950.29122573795266865No Hit
GGGGTG186190.2824866900203562No Hit
GGGCGG178070.2701670599491102No Hit
GGTGGG176500.2677850625092264No Hit
GGGAGG176450.26770920271814735No Hit
GGGGGT175380.26608580318905456No Hit
GGGGAG172660.2619590305543515No Hit
GGGTGG171570.26030528710882705No Hit
GCGGGG168670.2559054192262393No Hit
AGGGGG168270.2552985408976064No Hit
GAGGGG161070.24437473098221588No Hit
GGAGGG158070.2398231435174698No Hit
GGGGGC157410.2388217942752257No Hit
GGGGGA126410.1917887238061831No Hit
GCAATT122790.18629647493205617No Hit
CTGGGG109750.16651224141862664No Hit
CGCGGG107120.16252201640786593No Hit
GCCGGG104710.15886557447785327No Hit
GTCGGG104580.1586683390210476No Hit
CAGGGG101400.1538436563084168No Hit
CGGTGG100840.15299402664833087No Hit
GGCCGG99260.15059685725023125No Hit
GTTGGG98160.14892794184649102No Hit
CGGGTG97610.14809348414462092No Hit
TAGGGG96710.14672800790519713No Hit
GGCTGG96300.1461059576183485No Hit
TTGGGG95930.14554459516436313No Hit
GTGGTG95070.1442398067578026No Hit
GCGGGT94310.14308673793340027No Hit
GGGGTT93380.14167574581932899No Hit
TGCGGG93220.14143299448787586No Hit
GCGTGG93090.1412357590310702No Hit
CGGGGT91850.1393544362123085No Hit
GGGTCG89860.13633521652736028No Hit
CGGGCG89560.13588005778088566No Hit
GGCGGT89560.13588005778088566No Hit
GGGGCT89030.1350759439954472No Hit
GTGTGG88210.13383184342174995No Hit
TGGGGT88030.13355874817386518No Hit
CCGGGG87910.13337668467527533No Hit
GTGGCG87850.1332856529259804No Hit
TGGGTG87700.1330580735527431No Hit
GGGTGT87380.13257257088983687No Hit
GTGAGG87060.13208706822693062No Hit
GGCGTG86860.13178362906261423No Hit
TCGGGG86130.13067607611285934No Hit
TGGTGG85730.13006919778422654No Hit
AGCGGG85460.1296595549123994No Hit
CGGCGG84880.12877958133588183No Hit
GGGCCG84470.12815753104903319No Hit
GGTTGG84330.1279451236340117No Hit
GGTGGT84080.1275658246786162No Hit
GACGGG83290.1263672399795664No Hit
GGGTAG83290.1263672399795664No Hit
GTAGGG83250.12630655214670314No Hit
ATGGGG83160.12617000452276073No Hit
GGTGTG82350.12494107590727932No Hit
TGGCGG82340.12492590394906349No Hit
TGGGCG81930.12430385366221486No Hit
CGTGGG81060.1229838932974385No Hit
GGCGCG80960.12283217371528031No Hit
GGGTTG80760.1225287345509639No Hit
GGTCGG80720.12246804671810063No Hit
GGCAGG79830.12111774243689262No Hit
GGGATG78900.11970675032282134No Hit
GCAGGG78900.11970675032282134No Hit
GGGTGC77940.11825024233410261No Hit
GCGGCG77580.11770405183833307No Hit
GGGCGT77550.11765853596368561No Hit
CGGAGG77480.11755233225617487No Hit
GGACGG76900.1166723586796573No Hit
GGGGTA76530.11611099622567196No Hit
GGGGCA75900.11515516285807528No Hit
GAGGGT75690.11483655173554305No Hit
GTGGAG75600.11470000411160067No Hit
TGTGGG75430.11444208082193173No Hit
GAGTGG75020.1138200305350831No Hit
GGGCTG75020.1138200305350831No Hit
CGGGAG74840.11354693528719834No Hit
GCGGGC74650.11325866808109776No Hit
GGGGCC74460.11297040087499717No Hit
GGGACG73940.11218145904777453No Hit
AGGGTG73160.11099804630694055No Hit
GTGCGG72510.11001186902291223No Hit
AGGTGG72400.1098449774825382No Hit
GGTGAG72210.10955671027643762No Hit
ACGGGG72210.10955671027643762No Hit
AAGGGG72150.10946567852714272No Hit
GGGGAT72080.10935947481963196No Hit
GCGGTG71980.10920775523747377No Hit
CGGGGC71560.10857053299240932No Hit
GGATGG71330.10822157795344545No Hit
GGCGGC71280.10814571816236634No Hit
GTGGGT70960.1076602154994601No Hit
CGAGGG70510.10697747737974819No Hit
GGGCGC70480.10693196150510073No Hit
TGAGGG70280.10662852234078433No Hit
GCTGGG69890.10603681597036733No Hit
GGGCAG69730.10579406463891422No Hit
AGGGGT69500.10544510959995036No Hit
AGGGCG69010.10470168364737516No Hit
GGGGTC68660.10417066510982145No Hit
AGGCGG68380.10374585027977849No Hit
TGGAGG67860.10295690845255584No Hit
GGTAGG67710.10272932907931855No Hit
GGAAGG67590.10254726558072871No Hit
GAGGTG67270.10206176291782246No Hit
GAGAGG66690.10118178934130488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)