FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11386409
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1150551.0104590481511775No Hit
GTGGGG509600.447551111153657No Hit
TGGGGG500010.43912878941903455No Hit
GGGGTG485070.42600788360930997No Hit
GGGTGG467880.4109109377680004No Hit
CGGGGG459820.40383232325485585No Hit
GGGGGT449430.39470740950900324No Hit
GGCGGG437200.38396653413732107No Hit
GGTGGG425710.3738755563760269No Hit
GGGCGG390650.343084461483862No Hit
GCGGGG383810.33707729978784357No Hit
GAGGGG382940.3363132309756307No Hit
AGGGGG375950.33017433327750656No Hit
GGGGCG367560.3228058995597295No Hit
GGGGAG364440.3200657907159316No Hit
GGGAGG361810.3177560194790122No Hit
GGAGGG355510.31222310739057413No Hit
GGGGGA342450.30075329280724067No Hit
GTGTGG233800.20533251528203492No Hit
TGGTGG223230.19604951833365553No Hit
TTGGGG218490.19188666066711638No Hit
GTGGGT215390.18916411662359922No Hit
TGGGTG212920.1869948637889259No Hit
GTGGTG212720.18681921578611835No Hit
TGTGGG209360.18386832933895136No Hit
GTTGGG208780.18335895013080944No Hit
GGCTGG208690.18327990852954607No Hit
CGGTGG204050.17920487486441072No Hit
GGGTGT202530.17786995004307327No Hit
CTGGGG200980.1765086780213147No Hit
GTCGGG199640.17533183640250408No Hit
TAGGGG197890.17379491637793795No Hit
TGGGGT197290.17326797236951527No Hit
GGGGGC196800.17283763476263675No Hit
CGTGGG194750.17103724273385928No Hit
GGGGTT194430.1707562059293672No Hit
TGCGGG194100.17046638672473471No Hit
GGTGTG192850.1693685867071875No Hit
TCGGGG191900.16853425869385158No Hit
GGTTGG191770.16842008749202667No Hit
GAGTGG191690.16834982829090364No Hit
GGGTTG191550.16822687468893838No Hit
CGGGTG191140.16786679628318288No Hit
GGTGGT189970.16683925546675868No Hit
TGAGGG186760.16402010502169737No Hit
CAGGGG186190.16351950821369582No Hit
CGGGGT185070.1625358793979735No Hit
GGTAGG184190.16176302818562024No Hit
CGCGGG182780.16052470976582697No Hit
GGATGG182430.16021732576091374No Hit
GGCGGT181960.15980455295431598No Hit
CCGGGG180980.15894387774055893No Hit
GTGAGG180940.15890874813999742No Hit
GGCGTG177980.15630915769844558No Hit
GTAGGG175480.1541135576633511No Hit
AGGGTG174070.1528752392435578No Hit
AGGGGT174040.1528488920431367No Hit
ATGGGG173800.1526381144397676No Hit
GGGTAG173510.15238342483569667No Hit
GCGGGT171060.15023173680130408No Hit
GCGGTG170050.1493447143871259No Hit
AGGTGG169960.1492656727858625No Hit
GGGTCG169650.14899341838151078No Hit
GAGGTG169290.1486772519764572No Hit
GGCCGG168410.14790440076410394No Hit
GAGGGT167260.14689442474796047No Hit
TGGAGG166680.14638504553981857No Hit
GCAGGG166440.1461742679364495No Hit
GGGGAT166430.14616548553630912No Hit
GTGGCG166430.14616548553630912No Hit
GGGATG166100.14587566633167667No Hit
GAAGGG165680.14550680552578077No Hit
GGCAGG164790.14472517191328715No Hit
GGTGAG162050.1423187942748236No Hit
CGAGGG161390.14173915586555866No Hit
GACGGG160940.14134394785924168No Hit
TGGGAG159550.14012319423972913No Hit
GGAGTG158440.13914834782414717No Hit
GTGGAG158100.13884974621937435No Hit
GTGCGG157980.1387443574176898No Hit
GGGCTG157250.13810324220744222No Hit
TGGCGG156550.13748847419761576No Hit
GGTCGG156440.13739186779607163No Hit
GATGGG156370.13733039099508898No Hit
CGGGAG155300.13639067418006853No Hit
AGCGGG154100.1353367861632232No Hit
GGGGTA153990.13524017976167904No Hit
GGAGGT153750.13502940215830997No Hit
GCCGGG152850.13423898614567595No Hit
GGAAGG152440.13387890773992045No Hit
CGGCGG151420.13298310292560192No Hit
GCTGGG151400.13296553812532116No Hit
GGCGCG150830.13246494131731962No Hit
AAGGGG150480.13215755731240642No Hit
GGAGAG149260.1310861044952803No Hit
GTGGGA148540.13045377168517308No Hit
TGGGGA148070.13004099887857534No Hit
AGTGGG145920.12815278284839407No Hit
GCGTGG145310.12761705643983104No Hit
GGCGAG144840.12720428363323327No Hit
GGGCCG142040.12474521159392747No Hit
TGGGCG139240.12228613955462164No Hit
GGACGG138790.12189093154830466No Hit
GGGCAG138290.12145181154128576No Hit
GCGCGG138190.12136398753988197No Hit
GGGCGT138170.12134642273960122No Hit
GGTGGA137990.12118833953707442No Hit
CGGGCG137700.12093364993300347No Hit
GGGGCT136480.11986219711587737No Hit
GAGAGG136420.11980950271503508No Hit
GGCGGA136260.11966898431278905No Hit
CGGGGA135370.11888735070029542No Hit
GGTGCG135110.1186590082966456No Hit
GGGAGT135050.11860631389580333No Hit
CGGAGG133700.11742068987685231No Hit
AGAGGG133120.11691131066871038No Hit
ACGGGG132150.11605941785509373No Hit
GGGTGA130810.1148825762362831No Hit
GAGGAG129540.11376721141845511No Hit
GGGAAG128220.11260793459992524No Hit
AGGGAG125230.10998199695795224No Hit
TTGTGG123250.10824308173015743No Hit
AGGGGA116640.10243791523736763No Hit
GGTTTG115640.10155967522332986No Hit
GCGAGG115590.10151576322262797No Hit
GAGGCG115400.10134889761996078No Hit
GGGGCA115180.10115568481687248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)