FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12662082
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG498840.39396364673676887No Hit
GGGGGT327680.2587884046241368No Hit
GGTGGG323540.2555188001467689No Hit
GGGGTG320070.2527783345582504No Hit
TGGGGG319640.252438737957944No Hit
GTGGGG302030.23853107253609634No Hit
GGGTGG301290.23794665047975522No Hit
CGGGGG262150.20703546225652306No Hit
GGCGGG258590.20422391830980086No Hit
GGAGGG228870.18075226491188415No Hit
GAGGGG219760.17355755554260352No Hit
GGGTGT218930.1729020551280587No Hit
AGGGGG213200.16837673298909295No Hit
GGGGAG208610.16475173672070675No Hit
GGGCGG208120.16436475454826466No Hit
GGTGGT202780.16014743862818137No Hit
TGGGTG202200.15968937809753564No Hit
GGGGTT200680.15848894360342952No Hit
GGGGGA199560.15760441292356187No Hit
GTGGTG199360.15744646101644263No Hit
GGTGTG196720.1553614958424689No Hit
TGGGGT195710.1545638387115168No Hit
GTTGGG193650.15293693406818878No Hit
TTGGGG193410.15274739177964572No Hit
GCGGGG193320.15267631342144206No Hit
GTGGGT191000.15084407129885907No Hit
GTGTGG190230.15023595645645005No Hit
GGGAGG188070.14853007585956243No Hit
TGTGGG186870.1475823644168471No Hit
GGGGCG185780.14672152652304732No Hit
GGGGGC185450.1464609058763006No Hit
GGGTTG183330.1447866156608368No Hit
GGTTGG181810.14358618116673072No Hit
TGGTGG168390.13298760819903077No Hit
GGCGGT164610.13000231715447744No Hit
CTGGGG161120.127246056375247No Hit
GTCGGG158590.1252479647501888No Hit
CGGGGT154000.1216229684818026No Hit
GTAGGG152820.12069105222979919No Hit
GGTTGT150770.11907204518182712No Hit
GGCTGG150010.11847182793477407No Hit
CGTGGG147560.11653691707256357No Hit
TGAGGG145220.11468887975926866No Hit
GGCGTG143160.11306197511594064No Hit
CGGTGG142840.11280925206454989No Hit
TTTGGG140190.11071638929522018No Hit
TGGCGG139900.1104873590298973No Hit
GATGGG138740.1095712379686058No Hit
CGCGGG137560.10863932171660239No Hit
TGCGGG137250.10839449626056759No Hit
GTTGGT136720.10797592370670162No Hit
GGGGTA136380.10770740546459895No Hit
TAGGGG135160.10674389883117168No Hit
GTTTGG134610.10630953108659383No Hit
GGGGCT134610.10630953108659383No Hit
GGGAGT134420.10615947677483056No Hit
ATGGGG133960.10579618738845634No Hit
CAGGGG133450.10539341002530232No Hit
CGGGTG132810.10488796392252078No Hit
TTGGGT131400.10377440297733027No Hit
TGGTGT130970.10343480637702393No Hit
GGAGGT130890.10337162561417623No Hit
GTGTGT130150.10278720355783512No Hit
TGGGTT129200.10203693199901881No Hit
GGATGG128480.10146830513338961No Hit
GTGGTT128000.10108922055630344No Hit
TGTTGG127720.10086808788633654No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)