FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15601604
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG426090.2731065344306906No Hit
GGGGGT286630.18371828947844082No Hit
TGGGGG281550.18046221401337967No Hit
GGGGTG269360.1726489148167073No Hit
GTGGGG266420.17076449318929002No Hit
GGTGGG245530.15737484427883183No Hit
CGGGGG228200.14626701203286535No Hit
GGCGGG222160.1423956152200761No Hit
GGGTGG217450.13937669485778514No Hit
GCGGGG204550.1311083142476889No Hit
AGGGGG200310.12839064496188982No Hit
GGGGCG189240.12129522067090026No Hit
GTGGTG188790.1210067887891527No Hit
GGAGGG187670.12028891388346993No Hit
GGTGGT182860.1172058975474573No Hit
TTGGGG181700.11646238425228586No Hit
GTGGGT181040.1160393508257228No Hit
TGGGGT180590.11575091894397524No Hit
GGGGAG180590.11575091894397524No Hit
GGGGTT178590.11446899946954171No Hit
TGTGGG176030.11282814254226681No Hit
GGGGGC175900.11274481777642863No Hit
GGGTTG174480.11183465494958084No Hit
GGTGTG173260.11105268407017638No Hit
GAGGGG172410.11050786829354213No Hit
GTTGGG171860.11015534043807292No Hit
TGGGTG171560.10996305251690787No Hit
TGGTGG166660.10682234980454575No Hit
GGCGGT165900.106335220404261No Hit
GGGTGT165360.10598910214616394No Hit
GCAATT160240.1027073882916141No Hit
GGGAGG159310.10211129573600253No Hit
TAGGGG157820.10115626572754954No Hit
GGGCGG157310.100829376261569No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)