FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19882907
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG618770.31120700811003144No Hit
GTGGGG353680.17788143353484479No Hit
GGGTGG341460.17173545095795095No Hit
GGGGTG340640.17132303641514796No Hit
GGTGGG339090.17054347234033734No Hit
GGCGGG311440.15663705513484522No Hit
CGGGGG308940.1553796937238604No Hit
TGGGGG303780.15278449977158773No Hit
AGGGGG299180.15047095477537564No Hit
GGGGGT297570.1496612140267014No Hit
GGGGAG277620.13962746996704253No Hit
GGGGGC269260.1354228534087093No Hit
GCGGGG267120.1343465520409063No Hit
GGGGGA261910.13172621086041392No Hit
GGGGCG259350.13043867277556545No Hit
GGAGGG254710.12810500999677765No Hit
GAGGGG250870.12617370286950497No Hit
GGGCGG246910.12418204239450499No Hit
GTGGGT238250.11982654246685356No Hit
GTGGTG234040.11770914585075512No Hit
GTTGGG229560.11545595420227033No Hit
GGGAGG222320.11181463555605826No Hit
TTGGGG215850.10856058422442955No Hit
GGGTTG215570.10841975974639927No Hit
GGTTGG212610.10693104383579322No Hit
GTAGGG210140.10568877076174023No Hit
GGGTGT209220.1052260617624978No Hit
GGTGGT204710.10295778177708119No Hit
GGTGTG201050.1011170046713994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)