FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5491030
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG341280.62152273799269No Hit
GTGGGG172280.31374805819673174No Hit
GCAATT168500.30686410382023044No Hit
TGGGGG163420.29761265190683717No Hit
GGGGGT158800.28919892989111334No Hit
GGGTGG146930.26758185622733804No Hit
AGGGGG146280.26639810745889203No Hit
GGGGTG142490.2594959415628762No Hit
GGTGGG140100.25514338839889783No Hit
CGGGGG126890.23108597112017235No Hit
GGAGGG121490.2212517505823133No Hit
GAGGGG120010.2185564456941594No Hit
GGGAGG118950.2166260246256167No Hit
GGGGAG118460.21573366016940354No Hit
GGGGGA118140.21515089154493786No Hit
GGCGGG117050.2131658359178515No Hit
GCGGGG106950.1947722012081522No Hit
GGGCGG103810.18905378408058232No Hit
GGGGGC99380.18098608093563504No Hit
TTGGGG95800.17446635694942478No Hit
GTGTGG93620.17049624569525207No Hit
GTTGGG90450.16472319400913854No Hit
GGGGCG90400.16463213641156577No Hit
GTGGGT88450.1610808901062278No Hit
TGGGGT86340.15723825948865694No Hit
GTAGGG85020.15483433891273585No Hit
GGGTGT82930.15102813133419413No Hit
TGGTGG82560.15035430511215564No Hit
TAGGGG82310.1498990171242918No Hit
TGTGGG82060.14944372913642798No Hit
ATGGGG81410.14825998036798196No Hit
GGGGTT81290.14804144213380732No Hit
GGGTTG80560.14671200120924488No Hit
GGTGGT79080.14401669632109093No Hit
AGGGGT77230.1406475652108985No Hit
GGTTGG76610.13951845100099616No Hit
GGTAGG74760.13614931989080373No Hit
GGGTAG73350.13358149563925165No Hit
TGGGTG72820.1326162851049803No Hit
AGGTGG71890.1309226137901268No Hit
GTGGTG69170.12596908048216818No Hit
TGGAGG68910.1254955809747898No Hit
GGGGTA68890.12545915793576068No Hit
GTCGGG68260.12431183220634381No Hit
GGTGTG67570.12305523735983959No Hit
CTGGGG66350.12083343197906403No Hit
AGTGGG65400.11910333762518144No Hit
CGGGGT65360.11903049154712321No Hit
AAGGGG63730.11606201386625097No Hit
GAGGGT63420.11549745676129979No Hit
TGGGGA63210.11511501485149415No Hit
GGTGAG63200.11509680333197962No Hit
TGAGGG62930.11460509230508667No Hit
GTGGAG62870.11449582318799935No Hit
GTGGGA62340.113530612653728No Hit
GAAGGG61920.11276572883411673No Hit
GATGGG61560.11211011413159279No Hit
AGGGTG60960.11101742296071956No Hit
GGGGAT60840.11079888472654492No Hit
CGGTGG60770.11067140408994305No Hit
GAGTGG60760.1106531925704285No Hit
GGTGGA60740.1106167695313994No Hit
GGATGG60720.1105803464923703No Hit
TGGGAG59930.10914163645072054No Hit
GGGTGA59600.10854065630674027No Hit
GTTTGG59530.10841317567013839No Hit
TTGTGG59280.10795788768227453No Hit
TCGGGG59210.10783040704567268No Hit
AGAGGG58650.10681056195285767No Hit
GGAGGT57770.10520794823557693No Hit
TGCGGG57640.10497119848188773No Hit
GGGATG57230.10422452618179102No Hit
GGCGGT56850.10353248844023799No Hit
GTGAGG56740.10333216172557791No Hit
GGAAGG56730.10331395020606335No Hit
TTGGGT55570.10120141394237511No Hit
GGGTCG55540.10114677938383146No Hit
GTGTGT55520.10111035634480234No Hit
CAGGGG55210.10054579923985119No Hit
GGGGAA55180.10049116468130752No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)