FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2367946
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG68080.2875065563150511No Hit
GGGGGT49680.20980208163530759No Hit
GGGGTG42950.18138082540733613No Hit
GGGTGG42600.1799027511607106No Hit
GTGGGG39590.1671913126397308No Hit
GGCGGG38180.16123678496046784No Hit
CGGGGG36260.15312849195040765No Hit
TGGGGG36230.15300179987212545No Hit
GGTGGG36200.15287510779384328No Hit
GGGCGG35800.15118588008341405No Hit
AGGGGG34150.14421781577789358No Hit
CAATTT32880.13885451779728086No Hit
GCGGGG32250.13619398415335485No Hit
GGGGCG31980.13505375544881512No Hit
GGGGGC30530.12893030499850924No Hit
GGAGGG28790.12158216445814221No Hit
GGGTGT28020.11833040111556598No Hit
GAGGGG27930.11795032488071942No Hit
TTGGGG27450.11592325162820437No Hit
GGGAGG27160.11469856153814319No Hit
GTGGGT27160.11469856153814319No Hit
GTGTGG27140.11461410015262172No Hit
GTGGTG26870.11347387144808202No Hit
GGGGTT26330.11119341403900257No Hit
TGGTGG26290.11102449126795966No Hit
GGGGAG26190.11060218434035235No Hit
GGTGTG26050.11001095464170214No Hit
GGGGGA25510.1077304972326227No Hit
TGGGTG25010.1056189625945862No Hit
GGCTGG25000.10557673190182547No Hit
CTGGGG24780.1046476566610894No Hit
ATGGGG24720.10439427250452502No Hit
AGGGTG24680.1042253497334821No Hit
GTTGGG24600.10388750419139627No Hit
AGGTGG24270.10249389133029216No Hit
TGGGGT23990.10131143193299172No Hit
TGTGGG23740.10025566461397345No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)