FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17718061
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG571480.32254093718268606No Hit
GTGGGG333150.18802847557641889No Hit
GGGGGT316920.17886833102109762No Hit
TGGGGG310830.1754311603284355No Hit
GGGTGG308600.17417255759532602No Hit
GGGGTG306610.17304940986488307No Hit
CGGGGG304630.17193190609288456No Hit
GGTGGG293670.1657461276377816No Hit
GGCGGG270140.1524658934180213No Hit
AGGGGG263620.14878603251224837No Hit
GGGGCG256740.1449029891024757No Hit
GGGCGG251780.14210358571403495No Hit
GCGGGG250380.14131343153181378No Hit
GGGAGG247710.13980649462714909No Hit
GGGGGC246280.1389994085695946No Hit
GGGGAG236130.13327079074849105No Hit
GGAGGG235910.13314662366271343No Hit
GAGGGG235220.13275719053004728No Hit
GGGGGA227450.12837183481871972No Hit
GTTGGG214870.12127173509561798No Hit
GTGGTG205740.11611880103584699No Hit
GGTGGT204090.11518754789251488No Hit
CTGGGG195040.11007976550029938No Hit
CGTGGG194120.10956052132341117No Hit
GGTGTG191480.10807051629407982No Hit
TTGGGG189320.10685142127008142No Hit
GTGGGT189080.10671596626741493No Hit
GTGTGG188750.1065297156387485No Hit
GGGGTT188360.10630960125941546No Hit
GTCGGG187090.10559281853697196No Hit
TGGTGG183460.10354406162164133No Hit
GGGTTG181870.10264667222897583No Hit
TGGGTG180720.1019976170078656No Hit
GGGTAG180720.1019976170078656No Hit
ATGGGG179670.1014050013711997No Hit
GGTTGG179670.1014050013711997No Hit
CGGGGT178810.10091962094497813No Hit
GGGTGT178180.1005640515629786No Hit
CGGTGG177620.10024798989009011No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)