FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2222459
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG38660.17395146547135404No Hit
GGGGGT32580.1465943803687717No Hit
GGGTGT28940.13021612547183098No Hit
GTGGGG28400.12778638436074635No Hit
AGGGGT28060.12625654736487826No Hit
TTTTTT27710.12468171516324936No Hit
GGTGGG27170.12225197405216476No Hit
GGGTGG27150.12216198364064308No Hit
GGGAGG27090.12189201240607812No Hit
TGGGGG27010.12153205075999152No Hit
TGCAAT26950.12126207952542656No Hit
TTGGGG26020.11707752538966973No Hit
GGTGGT25010.11253300960782629No Hit
GAGGGT24380.10969831164489424No Hit
TGGTTG24330.1094733356160901No Hit
GGTGTT24300.10933834999880762No Hit
GGGGAG24150.10866342191239524No Hit
GGCGGT24130.10857343150087358No Hit
GGTTGG24090.10839345067783028No Hit
GGGGTG24030.10812347944326532No Hit
TGGTGG23550.10596370956674565No Hit
GTGTGG23230.10452386298239923No Hit
GGCGGG23210.10443387257087758No Hit
GGGTTG23010.10353396845566105No Hit
GTTGGG22720.10222910748859709No Hit
TGGGGT22600.10168916501946718No Hit
CGGGGG22340.1005192896696857No Hit
GTGTGT22320.10042929925816405No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)