FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15205484
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG444960.29263126382560395No Hit
GGGTGG301730.1984349856933196No Hit
GGGGGT283670.18655769194851016No Hit
GTGGGG275890.18144111690229656No Hit
GGTGGG244390.1607249068822801No Hit
TGGGGG236860.15577274620130474No Hit
GGGGTG230230.151412477235187No Hit
CGGGGG227030.14930797336013768No Hit
AGGGGG222820.146539235449526No Hit
GCGGGG211650.13919320161068202No Hit
GGAGGG203040.13353077087187754No Hit
GTGTGG196790.1294204117409219No Hit
GGCGGG195250.12840761925105443No Hit
GGGGCG192010.12627680907756703No Hit
GGGGGA191670.126053205540843No Hit
GGGTGT188290.12383032332282222No Hit
GAGGGG185050.12169951314933482No Hit
GGGCGG181780.11954897325201881No Hit
TTGGGG180620.11878609059731345No Hit
GGGGGC178260.11723401898946458No Hit
GTGGGT177670.11684600108750239No Hit
GGGAGG177500.11673419931914038No Hit
GGGGTT171950.11308420041085178No Hit
GTTGGG169610.11154528195222196No Hit
GGGGAG169440.11143348018385998No Hit
GGTTGG166290.10936185918185833No Hit
TGGTGG164250.10802023796151441No Hit
GGGTTG160780.10573816657200782No Hit
CGGTGG160260.10539618469231232No Hit
GGTGGT158480.10422555441181615No Hit
TGGGGT156170.10270636567701495No Hit
GTGGTG152960.10059528522735613No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)