FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5898595
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTTC607981.0307200273963546No Hit
GGGGGG387310.6566139902807363No Hit
GGGGGT186320.3158718304952281No Hit
GTGGGG179240.30386897218744463No Hit
GGGTGG174120.295188939060912No Hit
AGGGGG169270.2869666420562863No Hit
CGGGGG161620.27399745193558805No Hit
GGTGGG156300.26497835501505024No Hit
GGGGTG147320.2497543906642175No Hit
GGAGGG139410.2363444176113125No Hit
TGGGGG137620.23330979665496615No Hit
GGGGAG134610.22820688655518814No Hit
GGGAGG131930.2236634317155187No Hit
GGGCGG131800.22344304024941533No Hit
GGCGGG130250.22081529584587517No Hit
GAGGGG129170.21898435135824715No Hit
GGGGGA128390.21766200256162696No Hit
GCGGGG125830.21332198599836064No Hit
GGGGCG123870.20999916081710984No Hit
GGGGGC123030.20857509288228804No Hit
GTGTGG106690.18087358091206465No Hit
GGGTGT103390.17527902831097913No Hit
GTGGGT98110.1663277441492423No Hit
CTGGGG93300.15817325990341768No Hit
GGGGTT89750.15215487755982568No Hit
CGGGGT89390.15154456273061637No Hit
CGGTGG88850.15062909048680237No Hit
AGGGGT88450.14995096289879198No Hit
AGAGGG87940.1490863502240788No Hit
TTGGGG87640.148577754533071No Hit
GGCTGG85990.14578047823252824No Hit
ATGGGG85450.14486500598871427No Hit
GGTGGT83650.14181343184266762No Hit
TGGTGG81760.13860927898931866No Hit
AGGTGG81630.1383888875232153No Hit
GGGTTG79620.13498129639346318No Hit
GTAGGG79260.13437098156425387No Hit
GTTGGG78460.13301472638823314No Hit
GGCGGT77970.13218402009292043No Hit
TGGGGT77630.13160761164311163No Hit
GGGGCT76890.13035307560529244No Hit
GGTTGG76660.1299631522421865No Hit
GTGGTG74150.12570790162742146No Hit
GGGGAT74110.1256400888686204No Hit
GTCGGG73630.12482633576300797No Hit
CCGGGG73240.12416516136469785No Hit
TGAGGG71740.121622182909659No Hit
GGGTCG71570.12133397868475458No Hit
GGGGTA71420.1210796808392507No Hit
GAGGGT69340.11755341738159682No Hit
GGGTAG69030.11702786850088878No Hit
AAGGGG69010.11699396212148826No Hit
CGGGTG68880.11677357065538489No Hit
TAGGGG68720.11650231962018075No Hit
GGGCGT68370.11590895798067166No Hit
TGTGGG68330.11584114522187063No Hit
GGAGGT67850.1150273921162582No Hit
GCCGGG67680.11473918789135379No Hit
GGGTGC67420.11429840495914706No Hit
TGGGTG67140.1138237156475398No Hit
GGGTGA66250.11231488176421674No Hit
CGTGGG65930.11177237969380845No Hit
CGAGGG65050.11028049900018563No Hit
TGCGGG64990.11017877986198407No Hit
CGGGGA64980.11016182667228382No Hit
AGGAGG64810.10987362244737943No Hit
GGATGG64680.10965323098127604No Hit
AGGGGC64110.10868689916836127No Hit
GACGGG63920.10836478856405636No Hit
GGGGAA63610.10783923968334833No Hit
GATGGG63510.10766970778634574No Hit
GTGGAG63070.10692376743953434No Hit
GAGTGG62770.10641517174852656No Hit
GGGGCA62660.1062286866618237No Hit
AGTGGG62190.10543188674591153No Hit
CAGGGG62170.10539798036651102No Hit
GGTGGA61990.10509282295190635No Hit
TCGGGG61570.10438078898449546No Hit
GGTGTG61570.10438078898449546No Hit
GTGAGG61440.1041603975183921No Hit
CGGCGG61140.10365180182738432No Hit
ACGGGG61040.10348226993038172No Hit
GGGAGT60560.1026685168247693No Hit
GCGGGT60130.10193952966765815No Hit
AGCGGG60120.10192257647795788No Hit
GTGCGG59400.10070194681953923No Hit
GGTAGG59260.10046460216373561No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)