FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27318633
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG2283740.8359642299817857No Hit
GGGTGG1128670.4131502480376672No Hit
GGGGGT1073730.39303943209749914No Hit
GTGGGG1026180.375633729550084No Hit
TGGGGG961270.3518733898581236No Hit
AGGGGG947810.3469463497679405No Hit
CGGGGG872170.31925828792385036No Hit
GGTGGG811670.2971122310548994No Hit
GGGGGC782640.28648578426307053No Hit
GAGGGG766210.28047157410841167No Hit
GCGGGG765780.28031417238190504No Hit
GGGGTG762490.27910986614886624No Hit
GGGGGA755880.2766902721669858No Hit
GGGCGG738670.27039054260145445No Hit
GGGAGG736360.26954496588463994No Hit
GGGGAG664640.2432918221054472No Hit
GGGGCG652380.23880404264737554No Hit
GGAGGG649810.23786329279360358No Hit
GGGTGT603510.22091515340463777No Hit
GTGTGG557070.20391576694192567No Hit
GTGGGT527770.19319048650787177No Hit
TGGTGG504420.18464320670803697No Hit
AGGTGG488570.1788413058588986No Hit
TGGGGT488270.17873149070087072No Hit
AGGGGT483540.17700007170929818No Hit
GGGGTT482810.17673285482476375No Hit
TTGGGG475630.1741046120426304No Hit
ATGGGG467000.17094559599669573No Hit
GGTGGT458960.16800254976154919No Hit
CGGTGG454060.16620890218042755No Hit
GGGTTG447710.1638844813355046No Hit
GTAGGG424120.15524934940924753No Hit
GGGTAG421220.1541878028816449No Hit
GGTTGG418520.15319946645939422No Hit
CTGGGG416180.15234290822677693No Hit
TAGGGG412550.1510141448146399No Hit
GGGGAT402160.14721087984160847No Hit
TGTGGG400140.14647145777755424No Hit
GGGGTA391460.1432941392052816No Hit
GTGGTG389360.1425254330990866No Hit
GGGCGT386670.14154075718210352No Hit
AAGGGG385450.14109417553945688No Hit
TGGGTG384230.14064759389681028No Hit
CGGGGT379100.13876975469453395No Hit
GGGTGA378770.13864895802070332No Hit
GGGAGT375960.13762035604050904No Hit
GGAGGT375430.13742634926132652No Hit
GGGGCT375320.13738608370338296No Hit
GTTGGG374800.137195737429468No Hit
GGATGG374380.137041996208229No Hit
AGGGTG374290.13700905166082064No Hit
GAGGGT367640.13457481565786986No Hit
CAGGGG366090.1340074373413926No Hit
TCGGGG359240.1314999912330899No Hit
GTGAGG357550.1308813658428663No Hit
GGGTCG356520.130504333800304No Hit
AGTGGG355440.1301089992314037No Hit
GAGTGG352280.12895227956684363No Hit
TGAGGG351220.12856426600847853No Hit
CGGGTG348190.12745513291239718No Hit
GTGGAG345390.12643019143747053No Hit
GCGTGG344620.12614833253186572No Hit
TGGGGC344600.1261410115213305No Hit
GGGTGC344490.12610074596338697No Hit
AGGGGA342010.12519294065702335No Hit
TGGGGA341770.12510508853060107No Hit
GTGGGA340510.12464386486688407No Hit
GGGGAA335380.12276602566460774No Hit
TGGGAG334100.12229748099035556No Hit
GTGGCG333430.12205222713742667No Hit
GGCGGG330310.12091014949393698No Hit
TGGAGG327970.1200535912613197No Hit
GTGCGG325370.11910185989174496No Hit
CCGGGG324690.11885294553354848No Hit
GTGGGC322850.11817941256431096No Hit
GAGGTG321470.11767426283738282No Hit
CGGGGA321370.11763765778470686No Hit
GGTAGG320720.11739972494231318No Hit
GGGGTC318860.11671887096254047No Hit
ACGGGG318730.11667128439406174No Hit
GTGTGT317370.11617345567766879No Hit
GGTGGA316510.11585865222465559No Hit
TGCGGG314100.11497647045516515No Hit
AGAGGG313990.11493620489722162No Hit
AGGGAG311900.1141711592962942No Hit
GGCTGG311270.11394054746443573No Hit
GGGATG309290.11321576742145188No Hit
AGGGGC309010.1131132732739592No Hit
GGGGCA308950.11309131024235364No Hit
GCGGGT308710.11300345811593134No Hit
GAAGGG308060.11276552527353767No Hit
CGGGGC302090.11058020362878333No Hit
GGTGTG301240.11026906068103774No Hit
AGCGGG298630.10931366880619539No Hit
GGGAAG298290.10918921162709715No Hit
GATGGG297290.10882316110033764No Hit
GGGTTT296770.10863281482642267No Hit
CGTGGG292950.10723450181420133No Hit
CGAGGG292400.10703317402448358No Hit
GGTGAG291690.10677327815048433No Hit
AGGAGG291100.1065573083396962No Hit
TGGCGG288610.105645842528065No Hit
GGGCTG288000.10542255170674168No Hit
TGGGCG287240.10514435330640445No Hit
GGTCGG283110.10363256463088764No Hit
CGGGAG281940.10320428551457901No Hit
GGAAGG281230.10294438964057974No Hit
GCAGGG281040.10287484004049544No Hit
ATGTGG280720.1027577038719324No Hit
AGGTGT278930.10210247342903285No Hit
GGGGAC278620.1019889977657374No Hit
AGGGCG278050.10178034896548448No Hit
GGTGGC277850.10170713886013256No Hit
CGCGGG277230.10148018753354167No Hit
GGGCAG275880.10098601932241633No Hit
TGGTGT275400.10081031506957173No Hit
AGGCGG275030.10067487637467072No Hit
GGTTGT274290.10040399898486867No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)