FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10893412
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG346170.31777922289178084No Hit
GGGGGT244140.22411710857902006No Hit
GGGTGG219140.20116745790942267No Hit
GTGGGG200360.18392768032642115No Hit
TGGGGG195310.17929185089116248No Hit
GGTGGG190730.17508747488849224No Hit
GGGGTG185410.1702037892260019No Hit
AGGGGG180880.16604531252467086No Hit
GGGGCG156620.14377497151489357No Hit
GTGGGT152220.13973583299704445No Hit
GGTGGT151360.1389463650140103No Hit
CGGGGG148040.13589865140508778No Hit
GGGTGT146530.1345124925046441No Hit
GGGCGG143470.13170345526268537No Hit
TGGTGG137240.1259844023158217No Hit
GGAGGG136630.12542443083948354No Hit
GGGTTG134410.12338650186002328No Hit
TTGGGG134410.12338650186002328No Hit
GTGTGG134120.12312028591225596No Hit
TGGGGT133830.12285406996448862No Hit
GAGGGG132280.1214311916229736No Hit
GGGGAG130100.1194299820845847No Hit
GTGGTG129080.11849363633726513No Hit
TGTGGG128630.11808054262521236No Hit
GCGGGG128480.1179428447211948No Hit
GGGGGA126930.11651996637967975No Hit
GGGGTT126110.11576721783771696No Hit
GTTGGG125030.11477579292879035No Hit
GGTTGG124940.1146931741863798No Hit
GGGGGC124020.11384862704173862No Hit
TGGGTG123020.11293064101495472No Hit
GGCGGG121470.11150776267343969No Hit
GGGAGG121000.11107630924085125No Hit
GTGTTG113540.10422813348104341No Hit
AGGGGT112070.10287869402167107No Hit
CGGTGG108980.10004211719890883No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)