FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5900333
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG300640.5095305637834339No Hit
GGGGGT154640.2620869025527881No Hit
GGGTGG143300.24286764831747631No Hit
GTGGGG139810.23695272792230543No Hit
CGGGGG137250.23261398975278175No Hit
AGGGGG131770.2233263783586452No Hit
GGTGGG128920.21849614250585517No Hit
GGGGTG127300.21575053475795353No Hit
GGAGGG119350.2022767189580656No Hit
TGGGGG117490.19912435450677107No Hit
GCGGGG110010.18644710391769415No Hit
GGGAGG109280.1852098856115409No Hit
GAGGGG108750.18431163122488173No Hit
GGGGAG108180.18334558405432372No Hit
GCAATT104320.17680358040808883No Hit
GGGCGG103390.17522739818244157No Hit
GGGGGA102940.17446472936357998No Hit
GGGGCG102920.1744308329716306No Hit
GGGGGC101970.1728207543540339No Hit
GGCGGG95320.16155020403085724No Hit
GGGTGT91710.1554319052839899No Hit
GTGTGG86730.1469917036885884No Hit
GTGGGT82330.13953449745971966No Hit
TGGTGG78810.13356873247662462No Hit
GGGGTT75540.12802667239289714No Hit
AGGTGG75450.12787413862912483No Hit
GTTGGG74480.12623016361957876No Hit
TTGGGG73440.12446755123820977No Hit
GGGTTG72950.1236370896354494No Hit
ATGGGG71800.12168804709835868No Hit
GGTTGG71610.12136603137483934No Hit
AGGGGT71430.12106096384729471No Hit
GGGTGA70550.11956952260152097No Hit
CTGGGG68640.11633241717035293No Hit
GAGTGG67730.11479013133665505No Hit
TGTGGG67690.11472233855275625No Hit
GAGGGT67510.11441727102521161No Hit
TGGGGT66390.11251907307604503No Hit
CGGTGG65920.11172250786523404No Hit
GGTGGT65650.11126490657391709No Hit
GGGTAG65430.11089204626247368No Hit
CGGGGT65250.11058697873492904No Hit
GGAGGT64790.10980736172009276No Hit
GGGTGC64050.1085531952179648No Hit
GGGGAT63950.10838371325821779No Hit
GTAGGG63910.10831592047431898No Hit
AAGGGG63150.10702785758024166No Hit
GGTAGG62530.10597706942981014No Hit
TGGGGA62060.10518050421899916No Hit
GTGGAG61900.10490933308340393No Hit
GGGCGT61630.104451731792087No Hit
AGTGGG61630.104451731792087No Hit
GGGGTA61220.10375685575712422No Hit
TGGGAG60760.10297723874228794No Hit
GGATGG60570.1026552230187686No Hit
GGGTCG60400.10236710368719867No Hit
GCGTGG60060.1017908650240588No Hit
GGCTGG59840.10141800471261539No Hit
GGCGGT59210.10035026836620917No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)