FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25425064
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1016980.3999911268659933No Hit
GGGGGT649950.2556335748063407No Hit
GGGTGG539400.21215285829762318No Hit
TGGGGG528220.20775562256205135No Hit
GTGGGG524840.20642622571176222No Hit
CGGGGG481120.18923059544707538No Hit
GGGGTG463010.18210770285573322No Hit
GGTGGG460310.1810457586262123No Hit
AGGGGG450690.17726209066769705No Hit
GGGGGA398220.15662497447400722No Hit
GGAGGG397460.15632605683903095No Hit
GGGAGG396250.15585014849913456No Hit
GGGGCG392730.15446568787398135No Hit
GGGCGG386830.15214514307613936No Hit
GGGGAG382430.15041456729469788No Hit
GGGTGT378030.14868399151325637No Hit
GAGGGG370450.1457026814170458No Hit
GGGGTT354360.13937428043445632No Hit
GTGGGT350100.1376987684278789No Hit
TTGGGG342300.13463092954259623No Hit
GCGGGG336220.13223958846278616No Hit
GGGGGC333730.13126023989556132No Hit
GGTTGG333400.13113044671195323No Hit
GTGTGG331990.13057587583653674No Hit
TGGGGT329230.1294903328463598No Hit
TGGTGG329210.1294824665928078No Hit
GGGTTG318010.125077364603684No Hit
CGGGGT317740.1249711701807319No Hit
GTTGGG314180.1235709770484747No Hit
ATGGGG303270.11927993573585499No Hit
GGTGGT300320.11811966333693398No Hit
AGGGGT295410.11618849808991631No Hit
CTGGGG292740.11513835324072341No Hit
GGCGGG291600.11468997678825903No Hit
GGGGCT278680.10960837699366263No Hit
TGTGGG277100.1089869429630541No Hit
CGGTGG273890.107724409267957No Hit
GTGGTG272100.1070203795750524No Hit
AGGTGG267780.10532126880781892No Hit
GGGGAT261400.10281193392472877No Hit
GGGTTT261000.10265460885368863No Hit
GTAGGG259940.10223769741543227No Hit
GGGAGT257850.10141567391924756No Hit
GGAGGT257110.10112462253782331No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)